Evidence map›Paper›PMID 30463940›Full record

ArticleThe Journal of biological chemistry2019

Elevated histone H3 acetylation and loss of the Sp1-HDAC1 complex de-repress the GM2-synthase gene in renal cell carcinoma.

Avisek Banerjee, Barun Mahata, Arjun Dhir, Tapan Kumar Mandal, Kaushik Biswas

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Glycosylation in Cancer.Handbook of experimental pharmacology · 2025
    Review
  6. Article
  7. CD38 in SLE CD4 T cells promotes CaNature communications · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Beyond HAT Adaptor: TRRAP Liaisons with Sp1-Mediated Transcription.International journal of molecular sciences · 2021
    Review
  19. Epigenetic Regulation of Glycosylation in Cancer and Other Diseases.International journal of molecular sciences · 2021
    Review
  20. Elucidation of the Hdac2/Sp1/Molecular therapy. Nucleic acids · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Avisek BanerjeeFrom the Division of Molecular Medicine, Bose Institute, Kolkata, West Bengal 700 054 India and.
Barun MahataFrom the Division of Molecular Medicine, Bose Institute, Kolkata, West Bengal 700 054 India and.
Arjun DhirFrom the Division of Molecular Medicine, Bose Institute, Kolkata, West Bengal 700 054 India and.
Tapan Kumar MandalDepartment of Urology, Nil Ratan Sircar Medical College and Hospital, Kolkata, West Bengal 700 014 India.
Kaushik BiswasFrom the Division of Molecular Medicine, Bose Institute, Kolkata, West Bengal 700 054 India and kbiswas_1@yahoo.com.ORCID 0000-0003-2502-9515
Bose Institute · INNil Ratan Sircar Medical College and Hospital · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

GM2-synthase produces sialic acid-containing glycosphingolipids called gangliosides, and its mRNA overexpression and the gangliosides it generates are linked to tumor progression, migration, and suppression of tumor-specific host immune responses. However, the mechanism underlying GM2-synthase de-repression in renal cell carcinoma (RCC) is poorly understood. Here, we demonstrate that higher GM2-synthase mRNA expression levels in various cancer cells and in human RCC tumors correlate with higher histone acetylation levels (H3K9, H3K14, or both) at region +38/+187 relative to the transcription start site (TSS) of the GM2-synthase gene than in normal kidney epithelial (NKE) cells or healthy adjacent tissues. An increase in GM2-synthase mRNA expression in cells treated with a histone deacetylase (HDAC) inhibitor was accompanied by increased histone acetylation levels at this promoter region. DNA methylation around the TSS was absent in both RCC cell lines and NKE cells. Of note, both the transcription factor Sp1 and corepressor HDAC1 associated with the +38/+187 region when the GM2-synthase gene was repressed in NKE and tumor-adjacent tissues, indicating plausible site-specific repressive roles of HDAC1 and Sp1 in GM2-synthase mRNA expression. Site-directed mutagenesis of the Sp1-binding site within the +38/+187 region relieved repressed luciferase activity of this region by limiting HDAC1 recruitment. Moreover, Sp1 or HDAC1 knock down increased GM2-synthase transcription, and butyrate-mediated activation of GM2-synthase mRNA expression in SK-RC-45 cells was accompanied by Sp1 and HDAC1 loss from the +38/+187 region. Taken together, we have identified an epigenetic mechanism for the de-repression of the GM2-synthase gene in RCC.

Indexed as

Epigenesis, GeneticGene Expression Regulation, EnzymologicGene Expression Regulation, NeoplasticAcetylationCarcinoma, Renal CellHEK293 CellsHistone Deacetylase 1HistonesHumansKidney NeoplasmsMCF-7 CellsN-AcetylgalactosaminyltransferasesNeoplasm ProteinsSp1 Transcription FactorHDAC1 protein, humanHistone Deacetylase 1HistonesN-Acetylgalactosaminyltransferases(N-acetylneuraminyl)-galactosylglucosylceramide N-acetylgalactosaminyltransferaseNeoplasm ProteinsSP1 protein, humanSp1 Transcription FactoracetylationB4Galnt1epigeneticsgangliosidegene regulationGM2-synthasehistone deacetylase 1 (HDAC1)renal cell carcinomaspecificity protein 1 (Sp1)transcriptional repression

Identifiers

PMID30463940
PMCPMC6341395
OpenAlexW2901674023

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.