Evidence map›Paper›PMID 30463532›Full record

ArticleBMC genomics2018

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water.

David Armisén, Rajendhran Rajakumar, Markus Friedrich, Joshua B Benoit, Hugh M Robertson, Kristen A Panfilio, Seung-Joon Ahn, Monica F Poelchau, Hsu Chao, Huyen Dinh and 44 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
9.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 62 citations in OpenAlex.

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  13. Leg length and bristle density, both necessary for water surface locomotion, are genetically correlated in water striders.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  17. The evolution of red color vision is linked to coordinated rhodopsin tuning in lycaenid butterflies.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

54 authors at 20 institutions in 9 countries.

David ArmisénInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France. davidarmisen@gmail.com.
Rajendhran RajakumarDepartment of Molecular Genetics & Microbiology and UF Genetics Institute, University of Florida, 2033 Mowry Road, Gainesville, FL, 32610-3610, USA.
Markus FriedrichDepartment of Biological Sciences, Wayne State University, Detroit, MI, 48202, USA.
Joshua B BenoitDepartment of Biological Sciences, McMicken College of Arts and Sciences, University of Cincinnati, 318 College Drive, Cincinnati, OH, 45221-0006, USA.
Hugh M RobertsonDepartment of Entomology, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA.
Kristen A PanfilioInstitute for Zoology: Developmental Biology, University of Cologne, Zülpicher Str. 47b, 50674, Cologne, Germany.
Seung-Joon AhnUSDA-ARS Horticultural Crops Research Unit, 3420 NW Orchard Avenue, Corvallis, OR, 97330, USA.
Monica F PoelchauUSDA Agricultural Research Service, National Agricultural Library, Beltsville, MD, 20705, USA.
Hsu ChaoHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Huyen DinhHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Harsha Vardhan DoddapaneniHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Shannon DuganHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Richard A GibbsHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Daniel S T HughesHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Yi HanHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Sandra L LeeHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Shwetha C MuraliHoward Hughes Medical Institute, University of Washington, Seattle, WA, 98195, USA.
Donna M MuznyHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Jiaxin QuHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Kim C WorleyHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA.
Monica Munoz-TorresLawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Ehab AbouheifDepartment of Biology, McGill University, 1205 Avenue Docteur Penfield Avenue, Montréal, Québec, H3A 1B1, Canada.
François BonnetonInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
Travis ChenDepartment of Biology, McGill University, 1205 Avenue Docteur Penfield Avenue, Montréal, Québec, H3A 1B1, Canada.
Li-Mei ChiangUSDA Agricultural Research Service, National Agricultural Library, Beltsville, MD, 20705, USA.
Christopher P ChildersUSDA Agricultural Research Service, National Agricultural Library, Beltsville, MD, 20705, USA.
Andrew G CridgeLaboratory for Evolution and Development, Department of Biochemistry, University of Otago, P.O. Box 56, Dunedin, New Zealand.
Antonin J J CrumièreInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
Amelie DecarasInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
Elise M DidionDepartment of Biological Sciences, McMicken College of Arts and Sciences, University of Cincinnati, 318 College Drive, Cincinnati, OH, 45221-0006, USA.
Elizabeth J DuncanLaboratory for Evolution and Development, Department of Biochemistry, University of Otago, P.O. Box 56, Dunedin, New Zealand.
Elena N ElpidinaA.N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow, 119991, Russia.
Marie-Julie FavéDepartment of Biology, McGill University, 1205 Avenue Docteur Penfield Avenue, Montréal, Québec, H3A 1B1, Canada.
Cédric FinetInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
Chris G C JacobsInstitute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, Netherlands.
Alys M Cheatle JarvelaDepartment of Entomology, University of Maryland, College Park, MD, 20742, USA.
Emily C JenningsDepartment of Biological Sciences, McMicken College of Arts and Sciences, University of Cincinnati, 318 College Drive, Cincinnati, OH, 45221-0006, USA.
Jeffery W JonesDepartment of Biological Sciences, Wayne State University, Detroit, MI, 48202, USA.
Maryna P LesowayDepartment of Biology, McGill University, 1205 Avenue Docteur Penfield Avenue, Montréal, Québec, H3A 1B1, Canada.
Mackenzie R LovegroveLaboratory for Evolution and Development, Department of Biochemistry, University of Otago, P.O. Box 56, Dunedin, New Zealand.
Alexander MartynovCenter of Life Sciences, Skolkovo Institute of Science and Technology, Skolkovo, 143025, Russia.
Brenda OppertUSDA ARS Center for Grain and Animal Health Research, 1515 College Ave., Manhattan, KS-66502, USA.
Angelica Lillico-OuachourDepartment of Biology, McGill University, 1205 Avenue Docteur Penfield Avenue, Montréal, Québec, H3A 1B1, Canada.
Arjuna RajakumarDepartment of Biology, McGill University, 1205 Avenue Docteur Penfield Avenue, Montréal, Québec, H3A 1B1, Canada.
Peter Nagui RefkiInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
Andrew J RosendaleDepartment of Biological Sciences, McMicken College of Arts and Sciences, University of Cincinnati, 318 College Drive, Cincinnati, OH, 45221-0006, USA.
Maria Emilia SantosInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
William ToubianaInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
Maurijn van der ZeeInstitute of Biology, Leiden University, Sylviusweg 72, 2333 BE, Leiden, Netherlands.
Iris M Vargas JentzschInstitute for Zoology: Developmental Biology, University of Cologne, Zülpicher Str. 47b, 50674, Cologne, Germany.
Aidamalia Vargas LowmanInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
Severine VialaInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France.
Stephen RichardsHuman Genome Sequencing Center, Department of Human and Molecular Genetics, Baylor College of Medicine, One Baylor Plaza, Houston, TX, 77030, USA. stephenr@bcm.edu.
Abderrahman KhilaInstitut de Génomique Fonctionnelle de Lyon, Université de Lyon, Université Claude Bernard Lyon 1, CNRS UMR 5242, Ecole Normale Supérieure de Lyon 46, allée d'Italie, 69364, Lyon Cedex 07, France. abderrahman.khila@ens-lyon.fr.
Baylor Genetics · USMcGill University · CABaylor College of Medicine · USInstitut de Génomique Fonctionnelle de Lyon · FRUniversity of Cincinnati Medical Center · USCentre National de la Recherche Scientifique · FRUniversity of Otago · NZÉcole Normale Supérieure de Lyon · FRNational Agricultural Library · USUniversité Claude Bernard Lyon 1 · FRUniversity of Cologne · DEWayne State University · USAgricultural Research Service · USCenter for Grain and Animal Health Research · USLawrence Berkeley National Laboratory · USLeiden University · NLLomonosov Moscow State University · RUMax Planck Institute for Chemical Ecology · DEOregon State University · USSkolkovo Institute of Science and Technology · RU

Funding

The Human Genome Sequencing CenterU54HG003273 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI GIBBS, RICHARD A · 2004 to 2015
$341.3M
Deutsche Forschungsgemeinschaft (DE) PA 2044/1-1Deutsche Forschungsgemeinschaft (DE) SFB 680European Research Council 616346NHGRI NIH HHS U54 HG003273
6 · The paper itself

Abstract

backgroundHaving conquered water surfaces worldwide, the semi-aquatic bugs occupy ponds, streams, lakes, mangroves, and even open oceans. The diversity of this group has inspired a range of scientific studies from ecology and evolution to developmental genetics and hydrodynamics of fluid locomotion. However, the lack of a representative water strider genome hinders our ability to more thoroughly investigate the molecular mechanisms underlying the processes of adaptation and diversification within this group.

resultsHere we report the sequencing and manual annotation of the Gerris buenoi (G. buenoi) genome; the first water strider genome to be sequenced thus far. The size of the G. buenoi genome is approximately 1,000 Mb, and this sequencing effort has recovered 20,949 predicted protein-coding genes. Manual annotation uncovered a number of local (tandem and proximal) gene duplications and expansions of gene families known for their importance in a variety of processes associated with morphological and physiological adaptations to a water surface lifestyle. These expansions may affect key processes associated with growth, vision, desiccation resistance, detoxification, olfaction and epigenetic regulation. Strikingly, the G. buenoi genome contains three insulin receptors, suggesting key changes in the rewiring and function of the insulin pathway. Other genomic changes affecting with opsin genes may be associated with wavelength sensitivity shifts in opsins, which is likely to be key in facilitating specific adaptations in vision for diverse water habitats.

conclusionsOur findings suggest that local gene duplications might have played an important role during the evolution of water striders. Along with these findings, the sequencing of the G. buenoi genome now provides us the opportunity to pursue exciting research opportunities to further understand the genomic underpinnings of traits associated with the extreme body plan and life history of water striders.

Indexed as

GenomeAdaptation, PhysiologicalAnimalsEvolution, MolecularGenomicsHeteropteraInsect ProteinsPhenotypePhylogenyInsect ProteinsAdaptationEvolutionGenome sequenceWater stridersWater surface locomotion

Identifiers

PMID30463532
PMCPMC6249893
OpenAlexW2786461986

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.