Evidence map›Paper›PMID 30463021›Full record

ArticleCell reports2018

C. elegans Heterochromatin Factor SET-32 Plays an Essential Role in Transgenerational Establishment of Nuclear RNAi-Mediated Epigenetic Silencing.

Natallia Kalinava, Julie Zhouli Ni, Zoran Gajic, Matthew Kim, Helen Ushakov, Sam Guoping Gu

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Small RNAs and chromatin in the multigenerational epigenetic landscape ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Review
  17. Article
  18. Article
  19. Review
  20. eLife · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Natallia KalinavaDepartment of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: nkalinava@gmail.com.
Julie Zhouli NiDepartment of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: zni@dls.rutgers.edu.
Zoran GajicDepartment of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: zoranzg323@gmail.com.
Matthew KimDepartment of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: mmk183@scarletmail.rutgers.edu.
Helen UshakovDepartment of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: helen.ushakov@gmail.com.
Sam Guoping GuDepartment of Molecular Biology and Biochemistry, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA. Electronic address: sam.gu@rutgers.edu.
Rutgers, The State University of New Jersey · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
RNA-mediated Chromatin Regulation and Epigenetic Inheritance in C. elegansR01GM111752 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI GU, GUOPING · 2014 to 2023
$3.1M
NIGMS NIH HHS R01 GM111752NIH HHS P40 OD010440
6 · The paper itself

Abstract

The dynamic process by which nuclear RNAi engages a transcriptionally active target, before the repressive state is stably established, remains largely a mystery. Here, we found that the onset of exogenous dsRNA-induced nuclear RNAi in C. elegans is a transgenerational process, and it requires a putative histone methyltransferase (HMT), SET-32. By developing a CRISPR-based genetic approach, we found that silencing establishment at the endogenous targets of germline nuclear RNAi also requires SET-32. Although SET-32 and two H3K9 HMTs, MET-2 and SET-25, are dispensable for the maintenance of silencing, they do contribute to transcriptional repression in mutants that lack the germline nuclear Argonaute protein HRDE-1, suggesting a conditional role of heterochromatin in the maintenance phase. Our study indicates that (1) establishment and maintenance of siRNA-guided transcriptional repression are two distinct processes with different genetic requirements and (2) the rate-limiting step of the establishment phase is a transgenerational, chromatin-based process.

Indexed as

Epigenesis, GeneticRNA InterferenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCRISPR-Cas SystemsGerm CellsHeterochromatinHistone MethyltransferasesHistonesLysineMutationRNA, Double-StrandedTranscription, GeneticCaenorhabditis elegans ProteinsHeterochromatinHistone MethyltransferasesHistonesLysineRNA, Double-Strandedset-32 protein, C elegansCRISPRepigenetic silencingheterochromatinHRDE-1MET-2nuclear RNAiSET-25SET-32silencing establishmenttransgenerational epigenetic inheritance

Identifiers

PMID30463021
PMCPMC6317888
OpenAlexW2790591579

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.