Evidence map›Paper›PMID 30462292›Full record

ArticleNucleic acids research2019

Structural basis for acceptor RNA substrate selectivity of the 3' terminal uridylyl transferase Tailor.

Alena Kroupova, Anastasia Ivascu, Madalena M Reimão-Pinto, Stefan L Ameres, Martin Jinek

Open access · greenAbstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Alena KroupovaDepartment of Biochemistry, University of Zurich, Zurich 8057, Switzerland.
Anastasia IvascuDepartment of Biochemistry, University of Zurich, Zurich 8057, Switzerland.
Madalena M Reimão-PintoInstitute of Molecular Biotechnology, IMBA, Vienna Biocenter Campus (VBC), Vienna 1030, Austria.
Stefan L AmeresInstitute of Molecular Biotechnology, IMBA, Vienna Biocenter Campus (VBC), Vienna 1030, Austria.
Martin JinekDepartment of Biochemistry, University of Zurich, Zurich 8057, Switzerland.
University of Zurich · CHInstitute of Molecular Biotechnology · AT

Funding

European Research Council 338252
6 · The paper itself

Abstract

Non-templated 3'-uridylation of RNAs has emerged as an important mechanism for regulating the processing, stability and biological function of eukaryotic transcripts. In Drosophila, oligouridine tailing by the terminal uridylyl transferase (TUTase) Tailor of numerous RNAs induces their degradation by the exonuclease Dis3L2, which serves functional roles in RNA surveillance and mirtron RNA biogenesis. Tailor preferentially uridylates RNAs terminating in guanosine or uridine nucleotides but the structural basis underpinning its RNA substrate selectivity is unknown. Here, we report crystal structures of Tailor bound to a donor substrate analog or mono- and oligouridylated RNA products. These structures reveal specific amino acid residues involved in donor and acceptor substrate recognition, and complementary biochemical assays confirm the critical role of an active site arginine in conferring selectivity toward 3'-guanosine terminated RNAs. Notably, conservation of these active site features suggests that other eukaryotic TUTases, including mammalian TUT4 and TUT7, might exhibit similar, hitherto unknown, substrate selectivity. Together, these studies provide critical insights into the specificity of 3'-uridylation in eukaryotic post-transcriptional gene regulation.

Indexed as

AnimalsCatalytic DomainCrystallography, X-RayDrosophila melanogasterDrosophila ProteinsModels, MolecularNucleotidyltransferasesRNA NucleotidyltransferasesSubstrate SpecificityDrosophila ProteinsNucleotidyltransferasesRNA NucleotidyltransferasesTailor protein, Drosophila

Identifiers

PMID30462292
PMCPMC6344859
OpenAlexW2902412465

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.