Evidence map›Paper›PMID 30462278›Full record

ArticleNucleic acids research2019

Quantitative fluorescence imaging determines the absolute number of locked nucleic acid oligonucleotides needed for suppression of target gene expression.

Annette Buntz, Tobias Killian, Daniela Schmid, Heike Seul, Ulrich Brinkmann, Jacob Ravn, Marie Lindholm, Hendrik Knoetgen, Volker Haucke, Olaf Mundigl

Abstract read
In one paragraph

Article in Nucleic acids research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Annette BuntzRoche Innovation Center Munich, Roche Pharma Research and Early Development, Penzberg 82377, Germany.
Tobias KillianRoche Innovation Center Munich, Roche Pharma Research and Early Development, Penzberg 82377, Germany.
Daniela SchmidRoche Innovation Center Munich, Roche Pharma Research and Early Development, Penzberg 82377, Germany.
Heike SeulRoche Innovation Center Munich, Roche Pharma Research and Early Development, Penzberg 82377, Germany.
Ulrich BrinkmannRoche Innovation Center Munich, Roche Pharma Research and Early Development, Penzberg 82377, Germany.
Jacob RavnRoche Innovation Center Copenhagen, Roche Pharma Research and Early Development, Hørsholm 2970, Denmark.
Marie LindholmRoche Innovation Center Copenhagen, Roche Pharma Research and Early Development, Hørsholm 2970, Denmark.
Hendrik KnoetgenRoche Innovation Center Basel, Roche Pharma Research and Early Development, Basel 4070, Switzerland.
Volker HauckeDepartment of Molecular Pharmacology and Cell Biology, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin 13125, Germany.
Olaf MundiglRoche Innovation Center Munich, Roche Pharma Research and Early Development, Penzberg 82377, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Locked nucleic acid based antisense oligonucleotides (LNA-ASOs) can reach their intracellular RNA targets without delivery modules. Functional cellular uptake involves vesicular accumulation followed by translocation to the cytosol and nucleus. However, it is yet unknown how many LNA-ASO molecules need to be delivered to achieve target knock down. Here we show by quantitative fluorescence imaging combined with LNA-ASO microinjection into the cytosol or unassisted uptake that ∼105 molecules produce >50% knock down of their targets, indicating that a substantial amount of LNA-ASO escapes from endosomes. Microinjected LNA-ASOs redistributed within minutes from the cytosol to the nucleus and remained bound to nuclear components. Together with the fact that RNA levels for a given target are several orders of magnitude lower than the amounts of LNA-ASO, our data indicate that only a minor fraction is available for RNase H1 mediated reduction of target RNA. When non-specific binding sites were blocked by co-administration of non-related LNA-ASOs, the amount of target LNA-ASO required was reduced by an order of magnitude. Therefore, dynamic processes within the nucleus appear to influence the distribution and activity of LNA-ASOs and may represent important parameters for improving their efficacy and potency.

Indexed as

Gene Knockdown TechniquesCell NucleusFluorescence Recovery After PhotobleachingHumansMCF-7 CellsMicroinjectionsMicroscopy, FluorescenceOligonucleotidesOligonucleotides, Antisenselocked nucleic acidOligonucleotidesOligonucleotides, Antisense

Identifiers

PMID30462278
PMCPMC6344898

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.