Evidence map›Paper›PMID 30461124›Full record

ArticleHuman mutation2019

EPCAM mutation update: Variants associated with congenital tufting enteropathy and Lynch syndrome.

Sagar J Pathak, James L Mueller, Kevin Okamoto, Barun Das, Jozef Hertecant, Lynn Greenhalgh, Trevor Cole, Vered Pinsk, Baruch Yerushalmi, Odul E Gurkan and 11 more

Open access · bronzeAbstract read
In one paragraph

Article in Human mutation, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
7.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 79 citations in OpenAlex.

  1. Article
  2. Genotype-phenotype correlations inFrontiers in pediatrics · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Three patients with new mutations in theTranslational pediatrics · 2024
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 14 institutions in 7 countries.

Sagar J PathakDepartment of Pediatrics, University of California, San Diego, La Jolla, California.
James L MuellerDepartment of Pediatrics, University of California, San Diego, La Jolla, California.
Kevin OkamotoDepartment of Pediatrics, University of California, San Diego, La Jolla, California.
Barun DasDepartment of Pediatrics, University of California, San Diego, La Jolla, California.
Jozef HertecantGenetics/Metabolics Service, Tawam Hospital, Al Ain, United Arab Emirates.
Lynn GreenhalghLiverpool Women's NHS Foundation Trust, Liverpool, UK.
Trevor ColeWest Midlands Regional Genetics Service and Birmingham Health Partners, Birmingham Women's Hospital, Birmingham, UK.
Vered PinskDivision of Pediatrics, Pediatric Gastroenterology Unit, Soroka University Medical Center and Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Baruch YerushalmiDivision of Pediatrics, Pediatric Gastroenterology Unit, Soroka University Medical Center and Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Odul E GurkanDepartment of Pediatrics, Gazi University School of Medicine, Ankara, Turkey.
Michael YourshawDepartment of Human Genetics, University of California, Los Angeles, Los Angeles, California.
Erick HernandezPediatric Gastroenterology, Miami Children's Health System, Miami, Florida.
Sandy OesterreicherRocky Mountain Health Pediatric Gastroenterology, Lone Tree, Colorado.
Sandhia NaikPaediatric Gastroenterology, Barts and the London School of Medicine, London, UK.
Ian R SandersonPaediatric Gastroenterology, Barts and the London School of Medicine, London, UK.
Irene AxelssonDepartment of Pediatrics, Skane University Hospital, Malmo, Sweden.
Daniel AgardhDepartment of Clinical Sciences, Lund University, Skane University Hospital, Malmo, Sweden.
C Richard BolandDepartment of Medicine, University of California, San Diego, La Jolla, California.
Martin G MartinDepartment of Pediatrics, University of California, Los Angeles, Los Angeles, California.
Christopher D PutnamDepartment of Medicine, University of California, San Diego, La Jolla, California.
Mamata SivagnanamDepartment of Pediatrics, University of California, San Diego, La Jolla, California.ORCID 0000-0002-3643-1326
University of California San Diego · USBarts Health NHS Trust · GBBen-Gurion University of the Negev · ILBoston Children's Hospital · USUniversity of California, Los Angeles · USBirmingham Women's Hospital · GBGazi University · TRHealthONE · USJackson Health System · USLudwig Cancer Research · BELund University · SESkåne University Hospital · SETawam Hospital · AEUniversity of Liverpool · GB

Funding

Pilot and Feasibility ProgramP30DK041301 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ROZENGURT, JUAN ENRIQUE · 1990 to 2019
$18.0M
COngenital Diarrhea and Enteropathy (PediCODE) Consortium and BioRepositoryRC2DK118640 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI James Richard Goldenring, Izumi Kaji · 2019 to 2026
$14.8M
ENZYMATIC MECHANISMS OF GENETIC RECOMBINATIONR01GM026017 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Richard D Kolodner · 1985 to 2026
$10.5M
Training Grant in GastroenterologyT32DK007202 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GHOSH, PRADIPTA · 1985 to 2022
$7.7M
The Biology and Diagnosis of HNPCCR01CA072851 · NCI · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI GOEL, AJAY · 1996 to 2019
$6.6M
Mutant EpCAMs role in Congenital Tufting EnteropathyR01DK107764 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SIVAGNANAM, MAMATA B · 2016 to 2020
$1.7M
Neurogenin3 and Intestinal FailureR01DK083762 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MARTIN, MARTIN G · 2009 to 2012
$1.6M
Intestinal Epithelial Function in Congenital Tufting EnteropathyK08DK078672 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SIVAGNANAM, MAMATA B · 2009 to 2013
$723k
California Institute for Regenerative Medicine RT2-01985Ludwig Institute for Cancer ResearchNCI NIH HHS R01 CA072851NIDDK NIH HHS K08 DK078672NIDDK NIH HHS P30 DK041301NIDDK NIH HHS R01 DK083762NIDDK NIH HHS R01 DK107764NIDDK NIH HHS RC2 DK118640NIDDK NIH HHS T32 DK007202NIGMS NIH HHS R01 GM026017NIH CA R01 CA72851NIH GM R01 GM26017NIH HHS DK083762NIH HHS R01 DK107764NIH HHS T32 DK007202
6 · The paper itself

Abstract

The epithelial cell adhesion molecule gene (EPCAM, previously known as TACSTD1 or TROP1) encodes a membrane-bound protein that is localized to the basolateral membrane of epithelial cells and is overexpressed in some tumors. Biallelic mutations in EPCAM cause congenital tufting enteropathy (CTE), which is a rare chronic diarrheal disorder presenting in infancy. Monoallelic deletions of the 3' end of EPCAM that silence the downstream gene, MSH2, cause a form of Lynch syndrome, which is a cancer predisposition syndrome associated with loss of DNA mismatch repair. Here, we report 13 novel EPCAM mutations from 17 CTE patients from two separate centers, review EPCAM mutations associated with CTE and Lynch syndrome, and structurally model pathogenic missense mutations. Statistical analyses indicate that the c.499dupC (previously reported as c.498insC) frameshift mutation was associated with more severe treatment regimens and greater mortality in CTE, whereas the c.556-14A>G and c.491+1G>A splice site mutations were not correlated with treatments or outcomes significantly different than random simulation. These findings suggest that genotype-phenotype correlations may be useful in contributing to management decisions of CTE patients. Depending on the type and nature of EPCAM mutation, one of two unrelated diseases may occur, CTE or Lynch syndrome.

Indexed as

Models, MolecularColorectal Neoplasms, Hereditary NonpolyposisDiarrhea, InfantileEpithelial Cell Adhesion MoleculeEpithelial CellsGenetic Association StudiesHumansMalabsorption SyndromesMutation, MissenseMutS Homolog 2 ProteinRNA Splice SitesEPCAM protein, humanEpithelial Cell Adhesion MoleculeMSH2 protein, humanMutS Homolog 2 ProteinRNA Splice Sitescongenital tufting enteropathyEPCAMgenotype-phenotype correlationin silico simulationLynch syndromeprotein modeling

Identifiers

PMID30461124
PMCPMC6328345
OpenAlexW2900783897

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.