Evidence map›Paper›PMID 30460633›Full record

ArticleJournal of neuro-oncology2019

Transcriptome profiling reveals PDZ binding kinase as a novel biomarker in peritumoral brain zone of glioblastoma.

Banavathy S Kruthika, Ruchi Jain, A Arivazhagan, R D Bharath, T C Yasha, Paturu Kondaiah, Vani Santosh

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of neuro-oncology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. Insights into the Peritumoural Brain Zone of Glioblastoma:International journal of molecular sciences · 2023
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. An Integrative Pan-Cancer Analysis of PBK in Human Tumors.Frontiers in molecular biosciences · 2021
    Article
  20. Tumor Cell Invasion in Glioblastoma.International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Banavathy S KruthikaDepartment of Neuropathology, National Institute of Mental Health and Neuroscience, Bangalore, India.
Ruchi JainDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, India.
A ArivazhaganDepartment of Neurosurgery, National Institute of Mental Health and Neuroscience, Bangalore, India. arivazhagan.a@gmail.com.
R D BharathDepartment of Neuroimaging and Interventional Radiology, National Institute of Mental Health and Neuroscience, Bangalore, India.
T C YashaDepartment of Neuropathology, National Institute of Mental Health and Neuroscience, Bangalore, India.
Paturu KondaiahDepartment of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore, India.
Vani SantoshDepartment of Neuropathology, National Institute of Mental Health and Neuroscience, Bangalore, India. vani.santosh@gmail.com.ORCID http://orcid.org/0000-0001-8724-2034
National Institute of Mental Health and Neurosciences · INIndian Institute of Science Bangalore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposePeritumoural brain zone (PT) of glioblastoma (GBM) is the area where tumour recurrence is often observed. We aimed to identify differentially regulated genes between tumour core (TC) and PT to understand the underlying molecular characteristics of infiltrating tumour cells in PT.

methods17 each histologically characterised TC and PT tissues of GBM along with eight control tissues were subjected to cDNA Microarray. PT tissues contained 25-30% infiltrating tumour cells. Data was analysed using R Bioconductor software. Shortlisted genes were validated using qRT-PCR. Expression of one selected candidate gene, PDZ Binding Kinase (PBK) was correlated with patient survival, tumour recurrence and functionally characterized in vitro using gene knock-down approach.

resultsUnsupervised hierarchical clustering showed that TC and PT have distinct gene expression profiles compared to controls. Further, comparing TC with PT, we observed a significant overlap in gene expression profile in both, despite PT having fewer infiltrating tumour cells. qRT-PCR for 13 selected genes validated the microarray data. Expression of PBK was higher in PT as compared to TC and recurrent when compared to newly diagnosed GBM tumours. PBK knock-down showed a significant reduction in cell proliferation, migration and invasion with increase in sensitivity to radiation and Temozolomide treatment.

conclusionsWe show that several genes of TC are expressed even in PT contributing to the vulnerability of PT for tumour recurrence. PBK is identified as a novel gene up-regulated in PT of GBM with a strong role in conferring aggressiveness, including radio-chemoresistance, thus contributing to recurrence in GBM tumours.

Indexed as

Gene Expression Regulation, NeoplasticTranscriptomeBiomarkers, TumorBrain NeoplasmsCell MovementCell ProliferationCells, CulturedGlioblastomaHumansMitogen-Activated Protein Kinase KinasesNeoplasm InvasivenessNeoplasm Recurrence, LocalUp-RegulationBiomarkers, TumorMitogen-Activated Protein Kinase KinasesPDZ-binding kinaseGBMGene expression profilePBKPeritumoural brain zoneRecurrence

Identifiers

PMID30460633
OpenAlexW2900926319

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.