Evidence map›Paper›PMID 30459348›Full record

ArticleScientific reports2018

Stable pH Suppresses Defense Signaling and is the Key to Enhance Agrobacterium-Mediated Transient Expression in Arabidopsis Seedlings.

Yi-Chieh Wang, Manda Yu, Po-Yuan Shih, Hung-Yi Wu, Erh-Min Lai

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Comprehensive Optimization of Agroinfiltration in Transient Expression System in Nicotiana tabacum with RUBY Visible Reporter.Doklady biological sciences : proceedings of the Academy of Sciences of the USSR, Biological sciences sections · 2026
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. A SNARE-like protein fromFrontiers in plant science · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. A Highly EfficientPlant communications · 2020
    Article
  12. Review
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yi-Chieh WangInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
Manda YuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.ORCID http://orcid.org/0000-0001-5932-9597
Po-Yuan ShihInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
Hung-Yi WuInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan.
Erh-Min LaiInstitute of Plant and Microbial Biology, Academia Sinica, Taipei, Taiwan. emlai@gate.sinica.edu.tw.

Funding

Ministry of Science and Technology, Taiwan (Ministry of Science and Technology of Taiwan) MOST-103-2321-B-001-009
6 · The paper itself

Abstract

Agrobacterium-mediated transient expression is a powerful analysis platform for diverse plant gene functional studies, but the mechanisms regulating the expression or transformation levels are poorly studied. Previously, we developed a highly efficient and robust Agrobacterium-mediated transient expression system, named AGROBEST, for Arabidopsis seedlings. In this study, we found that AGROBEST could promote the growth of agrobacteria as well as inhibit the host immunity response. When the factor of agrobacterial growth is minimized, maintaining pH at 5.5 with MES buffer was the key to achieving optimal transient expression efficiency. The expression of plant immunity marker genes, FRK1 and NHL10, was suppressed in the pH-buffered medium as compared with non-buffered conditions in Col-0 and an efr-1 mutant lacking the immunity receptor EFR recognizing EF-Tu, a potent pathogen- or microbe-associated molecular pattern (PAMP or MAMP) of A. tumefaciens. Notably, such immune suppression could also occur in Arabidopsis seedlings without Agrobacterium infection. Furthermore, the PAMP-triggered influx of calcium ions was compromised in the pH-buffered medium. We propose that the enhanced transient expression efficiency by stable pH was due to inhibiting calcium ion uptake and subsequently led to suppressing immunity against Agrobacterium.

Indexed as

Agrobacterium tumefaciensArabidopsisArabidopsis ProteinsBacterial ProteinsCalciumGene Expression Regulation, PlantHydrogen-Ion ConcentrationPeptide Elongation Factor TuPlant DiseasesPlants, Genetically ModifiedSeedlingsSignal TransductionTransformation, GeneticArabidopsis ProteinsBacterial ProteinsCalciumPeptide Elongation Factor Tu

Identifiers

PMID30459348
PMCPMC6244089

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.