Evidence map›Paper›PMID 30459322›Full record

ArticleScientific reports2018

Genome-wide identification and analysis of non-specific Lipid Transfer Proteins in hexaploid wheat.

Allan Kouidri, Ryan Whitford, Radoslaw Suchecki, Elena Kalashyan, Ute Baumann

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Genome-Wide Identification and Expression Analysis ofInternational journal of molecular sciences · 2022
    Article
  5. Article
  6. Article
  7. Male Fertility Genes in Bread Wheat (International journal of molecular sciences · 2021
    Review
  8. Genome-Wide Analysis of nsLTP Gene Family and Identification ofInternational journal of molecular sciences · 2021
    Article
  9. Article
  10. Non-Specific Lipid Transfer Proteins inPathogens (Basel, Switzerland) · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Allan KouidriUniversity of Adelaide, School of Agriculture, Food & Wine, Waite Campus, Urrbrae, South Australia, 5064, Australia.ORCID http://orcid.org/0000-0002-5475-1155
Ryan WhitfordUniversity of Adelaide, School of Agriculture, Food & Wine, Waite Campus, Urrbrae, South Australia, 5064, Australia.ORCID http://orcid.org/0000-0003-2263-7558
Radoslaw SucheckiUniversity of Adelaide, School of Agriculture, Food & Wine, Waite Campus, Urrbrae, South Australia, 5064, Australia.ORCID http://orcid.org/0000-0003-4992-9497
Elena KalashyanUniversity of Adelaide, School of Agriculture, Food & Wine, Waite Campus, Urrbrae, South Australia, 5064, Australia.
Ute BaumannUniversity of Adelaide, School of Agriculture, Food & Wine, Waite Campus, Urrbrae, South Australia, 5064, Australia. ute.baumann@adelaide.edu.au.
The University of Adelaide · AUHealth Sciences and Nutrition · AUWine Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Non-specific Lipid Transfer Proteins (nsLTPs) are involved in numerous biological processes. To date, only a fraction of wheat (Triticum aestivum L.) nsLTPs (TaLTPs) have been identified, and even fewer have been functionally analysed. In this study, the identification, classification, phylogenetic reconstruction, chromosome distribution, functional annotation and expression profiles of TaLTPs were analysed. 461 putative TaLTPs were identified from the wheat genome and classified into five types (1, 2, C, D and G). Phylogenetic analysis of the TaLTPs along with nsLTPs from Arabidopsis thaliana and rice, showed that all five types were shared across species, however, some type 2 TaLTPs formed wheat-specific clades. Gene duplication analysis indicated that tandem duplications contributed to the expansion of this gene family in wheat. Analysis of RNA sequencing data showed that TaLTPs were expressed in most tissues and stages of wheat development. Further, we refined the expression profile of anther-enriched expressed genes, and identified potential cis-elements regulating their expression specificity. This analysis provides a valuable resource towards elucidating the function of TaLTP family members during wheat development, aids our understanding of the evolution and expansion of the TaLTP gene family and, additionally, provides new information for developing wheat male-sterile lines with application to hybrid breeding.

Indexed as

Genome, PlantCarrier ProteinsGene Expression Regulation, PlantPhylogenyPlant ProteinsTriticumCarrier Proteinslipid transfer proteinPlant Proteins

Identifiers

PMID30459322
PMCPMC6244205
OpenAlexW2901585721

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.