Evidence map›Paper›PMID 30459319›Full record

ArticleScientific reports2018

Transcriptome analysis provides insight into prickle development and its link to defense and secondary metabolism in Solanum viarum Dunal.

Shatrujeet Pandey, Ridhi Goel, Archana Bhardwaj, Mehar H Asif, Samir V Sawant, Pratibha Misra

Erratum issuedAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Horticulture research · 2024
    Article
  6. Article
  7. Article
  8. Article
  9. Comparative Transcriptome Analysis ofPlants (Basel, Switzerland) · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. A spinach genome assembly with remarkable completeness, and its use for rapid identification of candidate genes for agronomic traits.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. Genetic determinism of prickles in rose.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Shatrujeet PandeyCouncil of Scientific and Industrial Research - National Botanical Research Institute, Lucknow, 226001, India.
Ridhi GoelCouncil of Scientific and Industrial Research - National Botanical Research Institute, Lucknow, 226001, India.
Archana BhardwajCouncil of Scientific and Industrial Research - National Botanical Research Institute, Lucknow, 226001, India.
Mehar H AsifCouncil of Scientific and Industrial Research - National Botanical Research Institute, Lucknow, 226001, India.
Samir V SawantCouncil of Scientific and Industrial Research - National Botanical Research Institute, Lucknow, 226001, India. samirsawant@nbri.res.in.
Pratibha MisraCouncil of Scientific and Industrial Research - National Botanical Research Institute, Lucknow, 226001, India. pratibhamisra@nbri.res.in.

Funding

DST | Science and Engineering Research Board (SERB) EMR/2015/000332
6 · The paper itself

Abstract

Prickles are epidermal outgrowth found on the aerial surface of several terrestrial plants. Microscopic studies on prickles of S. viarum Dunal indicated a crucial role of glandular trichomes (GTs) in their development. A spontaneously obtained prickleless mutant showed normal epidermal GTs, but its downstream developmental process to prickle was perturbed. Thus, prickleless mutant offers an ideal opportunity to unveil molecular regulators working downstream to GTs in the prickle formation. Differential transcriptome analysis of epidermis of prickly and prickleless mutant revealed that expression of several defense regulators like ethylene, salicylic acid, PR-proteins, etc. were significantly down-regulated in prickleless mutant, provide an important link between defense and prickle development. It was also noteworthy that the expression of few essential development related TFs like MADS-box, R2R3-MYB, REM, DRL1, were also down-regulated in the stem, petioles, and leaves of prickleless mutant indicating their potential role in prickle development. Interestingly, the gene expression of terpenoid, steroid, flavonoid, glucosinolate, and lignin biosynthesis pathways were up-regulated in prickleless mutant. The biochemical and qRT-PCR analysis also confirmed metabolite elevation. These results indicated that the loss of prickle was compensated by elevated secondary metabolism in the prickleless mutant which played important role in the biotic and abiotic stress management.

Indexed as

MutationStress, PhysiologicalTranscriptomeGene Expression ProfilingGene Expression Regulation, PlantMetabolic Networks and PathwaysPlant ProteinsPolymorphism, Single NucleotideSolanumTrichomesPlant Proteins

Identifiers

PMID30459319
PMCPMC6244164

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.