Evidence map›Paper›PMID 30458709›Full record

ArticleBMC medical genetics2018

Targeted gene panel for genetic testing of south Indian children with steroid resistant nephrotic syndrome.

Annes Siji, K N Karthik, Varsha Chhotusing Pardeshi, P S Hari, Anil Vasudevan

Open access · goldAbstract read
In one paragraph

Article in BMC medical genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
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  6. High Incidence ofKidney international reports · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Annes SijiDivision of Molecular Medicine, St. John's Research Institute, Bangalore, India.
K N KarthikDivision of Molecular Medicine, St. John's Research Institute, Bangalore, India.
Varsha Chhotusing PardeshiDivision of Molecular Medicine, St. John's Research Institute, Bangalore, India.
P S HariDivision of Molecular Medicine, St. John's Research Institute, Bangalore, India.
Anil VasudevanDivision of Molecular Medicine, St. John's Research Institute, Bangalore, India. anil.vasudevan@sjri.res.in.ORCID 0000-0003-1723-9694
St. John's National Academy of Health Sciences · INSt.John's Medical College Hospital · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSteroid resistant nephrotic syndrome (SRNS) is a genetically heterogeneous disease with significant phenotypic variability. More than 53 podocyte-expressed genes are implicated in SRNS which complicates the routine use of genetic screening in the clinic. Next generation sequencing technology (NGS) allows rapid screening of multiple genes in large number of patients in a cost-effective manner.

methodsWe developed a targeted panel of 17 genes to determine relative frequency of mutations in south Indian ethnicity and feasibility of using the assay in a clinical setting. Twenty-five children with SRNS and 3 healthy individuals were screened.

resultsIn this study, novel variants including 1 pathogenic variant (2 patients) and 3 likely pathogenic variants (3 patients) were identified. In addition, 2 novel variants of unknown significance (VUS) in 2 patients (8% of total patients) were also identified.

conclusionsThe results show that genetic screening in SRNS using NGS is feasible in a clinical setting. However the panel needs to be screened in a larger cohort of children with SRNS in order to assess the utility of the customised targeted panel in Indian children with SRNS. Determining the prevalence of variants in Indian population and improvising the bioinformatics-based filtering strategy for a more accurate differentiation of pathogenic variants from those that are benign among the VUS will help in improving medical and genetic counselling in SRNS.

Indexed as

MutationAdolescentCase-Control StudiesChildChild, PreschoolDrug ResistanceFemaleGene ExpressionGenetic TestingHigh-Throughput Nucleotide SequencingHumansIndiaInfantIntracellular Signaling Peptides and ProteinsMaleMembrane ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsnephrinNPHS2 proteinPhosphoinositide Phospholipase Cphospholipase C epsilonSteroidsWT1 protein, humanWT1 ProteinsIndian populationNGSSRNSTargeted re-sequencing

Identifiers

PMID30458709
PMCPMC6245897
OpenAlexW2901480961

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.