Evidence map›Paper›PMID 30458172›Full record

ArticleJournal of molecular biology2019

Clustering, Spatial Distribution, and Phosphorylation of Discoidin Domain Receptors 1 and 2 in Response to Soluble Collagen I.

David A Yeung, Nirvan Shanker, Anjum Sohail, Brent A Weiss, Carolyn Wang, Jack Wellmerling, Subhadip Das, Ramesh K Ganju, Jeanette L C Miller, Andrew B Herr and 2 more

Abstract read
In one paragraph

Article in Journal of molecular biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Discoid Domain Receptors Signaling in Macrophages-Mediated Diseases.International journal of general medicine · 2025
    Review
  7. Article
  8. Therapeutic advances of targeting receptor tyrosine kinases in cancer.Signal transduction and targeted therapy · 2024
    Review
  9. Review
  10. Article
  11. Reviewing the Regulators of COL1A1.International journal of molecular sciences · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

David A YeungBiomedical Engineering Department, the Ohio State University Columbus, OH 43210, USA.
Nirvan ShankerBiomedical Engineering Department, the Ohio State University Columbus, OH 43210, USA.
Anjum SohailDepartment of Pathology and Oncology, Wayne State University, Detroit, MI 48201, USA.
Brent A WeissBiomedical Engineering Department, the Ohio State University Columbus, OH 43210, USA.
Carolyn WangBiomedical Engineering Department, the Ohio State University Columbus, OH 43210, USA.
Jack WellmerlingBiophysics Program, the Ohio State University, Columbus, OH 43210, USA.
Subhadip DasDepartment of Pathology, the Ohio State University College of Medicine, Columbus, OH 43210, USA.
Ramesh K GanjuDepartment of Pathology, the Ohio State University College of Medicine, Columbus, OH 43210, USA.
Jeanette L C MillerDivision of Immunobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45267, USA.
Andrew B HerrDivision of Immunobiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45267, USA.
Rafael FridmanDepartment of Pathology and Oncology, Wayne State University, Detroit, MI 48201, USA.
Gunjan AgarwalBiomedical Engineering Department, the Ohio State University Columbus, OH 43210, USA; Biophysics Program, the Ohio State University, Columbus, OH 43210, USA. Electronic address: agarwal.60@osu.edu.
The Ohio State University · USCincinnati Children's Hospital Medical Center · USWayne State University · US

Funding

REGULATION OF MATRIX METALLOPROTEINASE ACTIVATIONR01CA061986 · NCI · WAYNE STATE UNIVERSITY · PI FRIDMAN, RAFAEL A. · 1995 to 2015
$3.9M
NCI NIH HHS R01 CA061986
6 · The paper itself

Abstract

Discoidin domain receptors (DDR1 and DDR2) are receptor tyrosine kinases that signal in response to collagen. We had previously shown that collagen binding leads to clustering of DDR1b, a process partly mediated by its extracellular domain (ECD). In this study, we investigated (i) the impact of the oligomeric state of DDR2 ECD on collagen binding and fibrillogenesis, (ii) the effect of collagen binding on DDR2 clustering, and (iii) the spatial distribution and phosphorylation status of DDR1b and DDR2 after collagen stimulation. Studies were conducted using purified recombinant DDR2 ECD proteins in monomeric, dimeric or oligomeric state, and MC3T3-E1 cells expressing full-length DDR2-GFP or DDR1b-YFP. We show that the oligomeric form of DDR2 ECD displayed enhanced binding to collagen and inhibition of fibrillogenesis. Using atomic force and fluorescence microscopy, we demonstrate that unlike DDR1b, DDR2 ECD and DDR2-GFP do not undergo collagen-induced receptor clustering. However, after prolonged collagen stimulation, both DDR1b-YFP and DDR2-GFP formed filamentous structures consistent with spatial re-distribution of DDRs in cells. Immunocytochemistry revealed that while DDR1b clusters co-localized with non-fibrillar collagen, DDR1b/DDR2 filamentous structures associated with collagen fibrils. Antibodies against a tyrosine phosphorylation site in the intracellular juxtamembrane region of DDR1b displayed positive signals in both DDR1b clusters and filamentous structures. However, only the filamentous structures of both DDR1b and DDR2 co-localized with antibodies directed against tyrosine phosphorylation sites within the receptor kinase domain. Our results uncover key differences and similarities in the clustering abilities and spatial distribution of DDR1b and DDR2 and their impact on receptor phosphorylation.

Indexed as

3T3 CellsAnimalsBinding SitesCell LineCell MembraneCluster AnalysisCollagen Type IDiscoidin Domain Receptor 1Discoidin Domain Receptor 2Extracellular MatrixHEK293 CellsHumansMicePhosphorylationProtein BindingReceptor Protein-Tyrosine KinasesCollagen Type IDdr1 protein, mouseDdr2 protein, mouseDiscoidin Domain Receptor 1Discoidin Domain Receptor 2Receptor Protein-Tyrosine KinasesRecombinant ProteinsTyrosineatomic force microscopyfibrillogenesisfluorescence microscopyoligomerreceptor tyrosine kinase

Identifiers

PMID30458172
PMCPMC6346271
OpenAlexW2901865264

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.