Evidence map›Paper›PMID 30457103›Full record

ArticleeLife2018

A stochastic epigenetic switch controls the dynamics of T-cell lineage commitment.

Kenneth Kh Ng, Mary A Yui, Arnav Mehta, Sharmayne Siu, Blythe Irwin, Shirley Pease, Satoshi Hirose, Michael B Elowitz, Ellen V Rothenberg, Hao Yuan Kueh

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 87 citations in OpenAlex.

  1. Exchange dynamics and kinetic control of gene regulation complexes.Nature reviews. Molecular cell biology · 2026
    Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Transcriptional network dynamics in early T cell development.The Journal of experimental medicine · 2024
    Review
  11. Review
  12. Transcriptional priming and chromatin regulation during stochastic cell fate specification.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  13. T-cell commitment inheritance-an agent-based multi-scale model.NPJ systems biology and applications · 2024
    Article
  14. Article
  15. Antigen perception in T cells by long-term Erk and NFAT signaling dynamics.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. T-cell commitment inheritance - an agent-based multi-scale model.bioRxiv : the preprint server for biology · 2023
    Article
  17. Article
  18. Review
  19. T cells in health and disease.Signal transduction and targeted therapy · 2023
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Kenneth Kh NgDepartment of Bioengineering, University of Washington, Seattle, United States.
Mary A YuiDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, United States.ORCID 0000-0002-3136-2181
Arnav MehtaDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, United States.
Sharmayne SiuDrexel University, Philadelphia, United States.
Blythe IrwinDepartment of Bioengineering, University of Washington, Seattle, United States.
Shirley PeaseDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, United States.
Satoshi HiroseDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, United States.
Michael B ElowitzDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, United States.ORCID 0000-0002-1221-0967
Ellen V RothenbergDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, United States.ORCID 0000-0002-3901-347X
Hao Yuan KuehDepartment of Bioengineering, University of Washington, Seattle, United States.ORCID 0000-0001-6272-6673
California Institute of Technology · USDrexel University · USUniversity of Washington · US

Funding

Kinetic modeling and single-cell molecular mechanisms of early T-cell commitmentR01HL119102 · NHLBI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI PETERSON, CARSTEN, ROTHENBERG, ELLEN V. · 2014 to 2018
$3.0M
Key nodes in the T-cell developmental gene regulatory networkR01AI095943 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2011 to 2015
$2.0M
Bcl11b in early T cell developmentR01AI083514 · NIAID · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROTHENBERG, ELLEN V. · 2011 to 2015
$1.8M
Single-cell analysis of immune cell fate decision makingR00HL119638 · NHLBI · UNIVERSITY OF WASHINGTON · PI KUEH, HAO YUAN · 2016 to 2018
$747k
Howard Hughes Medical Institute InvestigatorNHLBI NIH HHS R00 HL119638NHLBI NIH HHS R01 HL119102NIAID NIH HHS R01 AI083514NIAID NIH HHS R01 AI095943NIH HHS R00HL119638NIH HHS R01AI083514NIH HHS R01AI095943NIH HHS R01HL119102
6 · The paper itself

Abstract

Cell fate decisions occur through the switch-like, irreversible activation of fate-specifying genes. These activation events are often assumed to be tightly coupled to changes in upstream transcription factors, but could also be constrained by

Indexed as

Cell DifferentiationEpigenesis, GeneticTranscription, GeneticAnimalsGenes, ReporterIntravital MicroscopyLuminescent ProteinsMiceModels, TheoreticalRepressor ProteinsStaining and LabelingTime FactorsT-LymphocytesTumor Suppressor ProteinsBcl11b protein, mouseLuminescent ProteinsRepressor ProteinsTumor Suppressor Proteinscomputational biologydevelopmental biologyepigeneticsgene regulationlymphocyte developmentmousequantitative and systems biologystochastic gene expressionsystems biology

Identifiers

PMID30457103
PMCPMC6245732
OpenAlexW2950214765

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.