Evidence map›Paper›PMID 30455981›Full record

ArticleCell discovery2018

Tetratricopeptide repeat domain 7A is a nuclear factor that modulates transcription and chromatin structure.

Marie-Therese El-Daher, Nicolas Cagnard, Marine Gil, Marie Chansel Da Cruz, Claire Leveau, Fernando Sepulveda, Mohammed Zarhrate, Frédéric Tores, Patricia Legoix, Sylvain Baulande and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cell discovery, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Marie-Therese El-Daher1Laboratory of Normal and Pathological Homeostasis of the Immune System, INSERM UMR 1163, Imagine Institute, Paris, France.
Nicolas Cagnard2Université Paris Descartes -Sorbonne Paris Cité, Imagine Institute, Paris, France.
Marine Gil1Laboratory of Normal and Pathological Homeostasis of the Immune System, INSERM UMR 1163, Imagine Institute, Paris, France.
Marie Chansel Da Cruz2Université Paris Descartes -Sorbonne Paris Cité, Imagine Institute, Paris, France.
Claire Leveau1Laboratory of Normal and Pathological Homeostasis of the Immune System, INSERM UMR 1163, Imagine Institute, Paris, France.
Fernando Sepulveda1Laboratory of Normal and Pathological Homeostasis of the Immune System, INSERM UMR 1163, Imagine Institute, Paris, France.ORCID 0000-0001-5865-4929
Mohammed Zarhrate6Genomic Platform, INSERM UMR 1163, Imagine Institute, Paris, France.
Frédéric Tores3Bioinformatic Platform, INSERM UMR 1163, Université Paris Descartes -Sorbonne Paris Cité, Imagine Institute, Paris, France.
Patricia Legoix7ICGex Next-Generation Sequencing Platform, , Curie Institute, Paris, France.
Sylvain Baulande7ICGex Next-Generation Sequencing Platform, , Curie Institute, Paris, France.ORCID 0000-0003-3104-1684
Jean Pierre de Villartay2Université Paris Descartes -Sorbonne Paris Cité, Imagine Institute, Paris, France.ORCID 0000-0001-5987-0463
Geneviève Almouzni8CNRS UMR3664, Curie Institute, PSL Research University, Paris, France.
Jean-Pierre Quivy8CNRS UMR3664, Curie Institute, PSL Research University, Paris, France.
Alain Fischer2Université Paris Descartes -Sorbonne Paris Cité, Imagine Institute, Paris, France.
Geneviève de Saint Basile1Laboratory of Normal and Pathological Homeostasis of the Immune System, INSERM UMR 1163, Imagine Institute, Paris, France.
Délégation Paris 5 · FRCentre National de la Recherche Scientifique · FRInserm · FRInstitut Curie · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A loss-of-function mutation in tetratricopeptide repeat domain 7A (TTC7A) is a recently identified cause of human intestinal and immune disorders. However, clues to related underlying molecular dysfunctions remain elusive. It is now shown based on the study of TTC7A-deficient and wild-type cells that TTC7A is an essential nuclear protein. It binds to chromatin, preferentially at actively transcribed regions. Its depletion results in broad range of epigenomic changes at proximal and distal transcriptional regulatory elements and in altered control of the transcriptional program. Loss of WT_TTC7A induces general decrease in chromatin compaction, unbalanced cellular distribution of histones, higher nucleosome accessibility to nuclease digestion along with genome instability, and reduced cell viability. Our observations characterize for the first time unreported functions for TTC7A in the nucleus that exert a critical role in chromatin organization and gene regulation to safeguard healthy immune and intestinal status.

Identifiers

PMID30455981
PMCPMC6232119
OpenAlexW2894801722

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.