Evidence map›Paper›PMID 30455349›Full record

ArticleThe Journal of biological chemistry2019

Non-cryogenic structure of a chloride pump provides crucial clues to temperature-dependent channel transport efficiency.

Ji-Hye Yun, Xuanxuan Li, Jae-Hyun Park, Yang Wang, Mio Ohki, Zeyu Jin, Wonbin Lee, Sam-Yong Park, Hao Hu, Chufeng Li and 10 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Microbial Rhodopsins.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  5. Early-stage dynamics of chloride ion-pumping rhodopsin revealed by a femtosecond X-ray laser.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. Dynamic Structural Biology Experiments at XFEL or Synchrotron Sources.Methods in molecular biology (Clifton, N.J.) · 2021
    Review
  7. Review
  8. Article
  9. Article
  10. The XFEL Protein Crystallography: Developments and Perspectives.International journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 5 institutions in 4 countries.

Ji-Hye YunFrom the Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, Seoul 03722, South Korea.
Xuanxuan LiComplex Systems Division, Beijing Computational Science Research Center, 10 East Xibeiwang Road, Haidian District, Beijing 100193, China.
Jae-Hyun ParkFrom the Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, Seoul 03722, South Korea.
Yang WangComplex Systems Division, Beijing Computational Science Research Center, 10 East Xibeiwang Road, Haidian District, Beijing 100193, China.ORCID 0000-0002-5504-9800
Mio OhkiDrug Design Laboratory, Graduate School of Medical Life Science, Yokohama City University, Tsurumi, Yokohama 230-0045, Japan.ORCID 0000-0003-4946-5872
Zeyu JinFrom the Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, Seoul 03722, South Korea.
Wonbin LeeFrom the Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, Seoul 03722, South Korea.
Sam-Yong ParkDrug Design Laboratory, Graduate School of Medical Life Science, Yokohama City University, Tsurumi, Yokohama 230-0045, Japan.
Hao HuPhysics Department, and Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287.
Chufeng LiPhysics Department, and Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287.
Nadia ZatsepinPhysics Department, and Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287.
Mark S HunterLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California 94025, and.
Raymond G SierraLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California 94025, and.
Jake KoralekLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California 94025, and.
Chun Hong YoonLinac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, California 94025, and.
Hyun-Soo ChoDepartment of Systems Biology and Division of Life Sciences, Yonsei University, Seoul 03722, South Korea.
Uwe WeierstallPhysics Department, and Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona 85287.
Leihan TangComplex Systems Division, Beijing Computational Science Research Center, 10 East Xibeiwang Road, Haidian District, Beijing 100193, China.
Haiguang LiuComplex Systems Division, Beijing Computational Science Research Center, 10 East Xibeiwang Road, Haidian District, Beijing 100193, China, hgliu@csrc.ac.cn.
Weontae LeeFrom the Department of Biochemistry, College of Life Science & Biotechnology, Yonsei University, Seoul 03722, South Korea, wlee@spin.yonsei.ac.kr.
Yonsei University · KRArizona State University · USBeijing Computational Science Research Center · CNSLAC National Accelerator Laboratory · USYokohama City University · JP

Funding

ZWITTERION SURFACTANT DDMAB FOR IMPROV STABIL OF PROTEINP41RR001209 · NCRR · STANFORD UNIVERSITY · PI GONZALEZ, ANA M · 1985 to 2011
$38.9M
X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
NCRR NIH HHS P41 RR001209NIGMS NIH HHS P41 GM103393
6 · The paper itself

Abstract

Non-cryogenic protein structures determined at ambient temperature may disclose significant information about protein activity. Chloride-pumping rhodopsin (ClR) exhibits a trend to hyperactivity induced by a change in the photoreaction rate because of a gradual decrease in temperature. Here, to track the structural changes that explain the differences in CIR activity resulting from these temperature changes, we used serial femtosecond crystallography (SFX) with an X-ray free electron laser (XFEL) to determine the non-cryogenic structure of ClR at a resolution of 1.85 Å, and compared this structure with a cryogenic ClR structure obtained with synchrotron X-ray crystallography. The XFEL-derived ClR structure revealed that the all-

Indexed as

ActinomycetalesChloride ChannelsCrystallography, X-RayProtein DomainsRhodopsins, MicrobialChloride ChannelsRhodopsins, Microbialanion pumpchloride transportcircular dichroism (CD)light-driven chloride pumpnon-cryogenic conditionrhodopsinserial femtosecond crystallographystructure-functiontemperature dependencetime-resolved XFELtransport efficiencyultraviolet-visible spectroscopy (UV-Vis spectroscopy)X-ray crystallographyX-ray free electron laser

Identifiers

PMID30455349
PMCPMC6341376
OpenAlexW2901189491

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.