Evidence map›Paper›PMID 30455297›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Testing the retroelement invasion hypothesis for the emergence of the ancestral eukaryotic cell.

Gloria Lee, Nicholas A Sherer, Neil H Kim, Ema Rajic, Davneet Kaur, Niko Urriola, K Michael Martini, Chi Xue, Nigel Goldenfeld, Thomas E Kuhlman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.7field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Repeat sequences limit the effectiveness of lateral gene transfer and favored the evolution of meiotic sex in early eukaryotes.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Gloria LeeDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Nicholas A ShererDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0001-5940-2563
Neil H KimDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0001-9966-4998
Ema RajicUniversity of Illinois Laboratory High School, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Davneet KaurDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Niko UrriolaDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
K Michael MartiniDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Chi XueDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801.
Nigel GoldenfeldDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801; nigel@illinois.edu thomask@ucr.edu.ORCID 0000-0002-6322-0903
Thomas E KuhlmanDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801; nigel@illinois.edu thomask@ucr.edu.
University of Illinois Urbana-Champaign · USUniversity of California, Riverside · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phylogenetic evidence suggests that the invasion and proliferation of retroelements, selfish mobile genetic elements that copy and paste themselves within a host genome, was one of the early evolutionary events in the emergence of eukaryotes. Here we test the effects of this event by determining the pressures retroelements exert on simple genomes. We transferred two retroelements, human LINE-1 and the bacterial group II intron Ll.LtrB, into bacteria, and find that both are functional and detrimental to growth. We find, surprisingly, that retroelement lethality and proliferation are enhanced by the ability to perform eukaryotic-like nonhomologous end-joining (NHEJ) DNA repair. We show that the only stable evolutionary consequence in simple cells is maintenance of retroelements in low numbers, suggesting how retrotransposition rates and costs in early eukaryotes could have been constrained to allow proliferation. Our results suggest that the interplay between NHEJ and retroelements may have played a fundamental and previously unappreciated role in facilitating the proliferation of retroelements, elements of which became the ancestors of the spliceosome components in eukaryotes.

Indexed as

Evolution, MolecularRetroelementsCell LineEscherichia coliGene Expression RegulationHumansPhylogenyRetroelementsevolutionintronsjunk DNALINE-1retroelements

Identifiers

PMID30455297
PMCPMC6298092
OpenAlexW2901780801

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.