Evidence map›Paper›PMID 30451959›Full record

ArticleScientific reports2018

Peculiar features of the plastids of the colourless alga Euglena longa and photosynthetic euglenophytes unveiled by transcriptome analyses.

Kristína Záhonová, Zoltán Füssy, Erik Birčák, Anna M G Novák Vanclová, Vladimír Klimeš, Matej Vesteg, Juraj Krajčovič, Miroslav Oborník, Marek Eliáš

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In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  5. Article
  6. Versatile biotechnological applications of Euglena gracilis.World journal of microbiology & biotechnology · 2023
    Review
  7. Euglenozoan kleptoplasty illuminates the early evolution of photoendosymbiosis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
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  11. The Lipid Composition ofPlant physiology · 2020
    Article
  12. The Cryptic Plastid ofmSphere · 2020
    Article
  13. Article
  14. Genomic Insights into Plastid Evolution.Genome biology and evolution · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Metabolites · 2019
    Article
  19. Principles of plastid reductive evolution illuminated by nonphotosynthetic chrysophytes.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 7 institutions in 2 countries.

Kristína ZáhonováLife Science Research Centre, Department of Biology and Ecology and Institute of Environmental Technologies, Faculty of Science, University of Ostrava, 701 00, Ostrava, Czech Republic.ORCID http://orcid.org/0000-0002-5766-0267
Zoltán FüssyInstitute of Parasitology, Biology Centre CAS, 370 05, České Budějovice, Czech Republic.
Erik BirčákDepartment of Genetics, Faculty of Natural Sciences, Comenius University, 842 15, Bratislava, Slovakia.
Anna M G Novák VanclováDepartment of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic.
Vladimír KlimešLife Science Research Centre, Department of Biology and Ecology and Institute of Environmental Technologies, Faculty of Science, University of Ostrava, 701 00, Ostrava, Czech Republic.
Matej VestegDepartment of Biology and Ecology, Faculty of Natural Sciences, Matej Bel University, 974 01, Banská Bystrica, Slovakia.
Juraj KrajčovičDepartment of Biology, Faculty of Natural Sciences, University of ss. Cyril and Methodius in Trnava, 917 01, Trnava, Slovakia.
Miroslav OborníkInstitute of Parasitology, Biology Centre CAS, 370 05, České Budějovice, Czech Republic.
Marek EliášLife Science Research Centre, Department of Biology and Ecology and Institute of Environmental Technologies, Faculty of Science, University of Ostrava, 701 00, Ostrava, Czech Republic. marek.elias@osu.cz.
University of Ostrava · CZCharles University · CZComenius University Bratislava · SKInstitute of Parasitology · CZMatej Bel University · SKUniversity of South Bohemia in České Budějovice · CZUniversity of Ss. Cyril and Methodius in Trnava · SK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Euglenophytes are a familiar algal group with green alga-derived secondary plastids, but the knowledge of euglenophyte plastid function and evolution is still highly incomplete. With this in mind we sequenced and analysed the transcriptome of the non-photosynthetic species Euglena longa. The transcriptomic data confirmed the absence of genes for the photosynthetic machinery, but provided candidate plastid-localised proteins bearing N-terminal bipartite topogenic signals (BTSs) of the characteristic euglenophyte type. Further comparative analyses including transcriptome assemblies available for photosynthetic euglenophytes enabled us to unveil salient aspects of the basic euglenophyte plastid infrastructure, such as plastidial targeting of several proteins as C-terminal translational fusions with other BTS-bearing proteins or replacement of the conventional eubacteria-derived plastidial ribosomal protein L24 by homologs of archaeo-eukaryotic origin. Strikingly, no homologs of any key component of the TOC/TIC system and the plastid division apparatus are discernible in euglenophytes, and the machinery for intraplastidial protein targeting has been simplified by the loss of the cpSRP/cpFtsY system and the SEC2 translocon. Lastly, euglenophytes proved to encode a plastid-targeted homolog of the termination factor Rho horizontally acquired from a Lambdaproteobacteria-related donor. Our study thus further documents a substantial remodelling of the euglenophyte plastid compared to its green algal progenitor.

Indexed as

Evolution, MolecularPhotosynthesisBase SequenceChloroplast ProteinsEuglena longaGene Expression ProfilingPhylogenyPlastidsSequence HomologyChloroplast Proteins

Identifiers

PMID30451959
PMCPMC6242988
OpenAlexW2950920384

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.