Evidence map›Paper›PMID 30451953›Full record

ArticleScientific reports2018

Deep transfer learning-based hologram classification for molecular diagnostics.

Sung-Jin Kim, Chuangqi Wang, Bing Zhao, Hyungsoon Im, Jouha Min, Hee June Choi, Joseph Tadros, Nu Ri Choi, Cesar M Castro, Ralph Weissleder and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 65 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. On the use of deep learning for phase recovery.Light, science & applications · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Classification of Holograms with 3D-CNN.Sensors (Basel, Switzerland) · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Sung-Jin KimDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Chuangqi WangDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Bing ZhaoDepartment of Computer Science, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Hyungsoon ImCenter for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0002-0626-1346
Jouha MinCenter for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts, USA.ORCID http://orcid.org/0000-0002-6737-7254
Hee June ChoiDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Joseph TadrosDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Nu Ri ChoiDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Cesar M CastroCenter for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Ralph WeisslederCenter for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Hakho LeeCenter for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts, USA. hlee@mgh.harvard.edu.ORCID http://orcid.org/0000-0002-0087-0909
Kwonmoo LeeDepartment of Biomedical Engineering, Worcester Polytechnic Institute, Worcester, Massachusetts, USA. klee@wpi.edu.ORCID http://orcid.org/0000-0001-6838-7094
Worcester Polytechnic Institute · USMassachusetts General Hospital · USHarvard University · US

Funding

Dana Farber/Harvard Cancer Consortium Career Development Program in Clinical OncologyK12CA087723 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI David Tsai Ting · 2002 to 2026
$17.9M
Training Grant in Molecular Imaging Research (MGH/HMS)T32CA079443 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WEISSLEDER, MD, PHD, RALPH · 2000 to 2025
$10.1M
Early Detection through Novel OCEAN Technology - Ovarian Cancer Exosomal Analysis with NanoplasmonicsU01CA233360 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI CASTRO, CESAR M, DINULESCU, DANIELA M · 2018 to 2022
$3.5M
Clinical platform for high-throughput analyses of extracellular vesiclesR01CA229777 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI LEE, HAKHO, SKOG, JOHAN · 2018 to 2022
$3.2M
Novel Clickdyes for Biomedical SensingR01EB010011 · NIBIB · MASSACHUSETTS GENERAL HOSPITAL · PI WEISSLEDER, MD, PHD, RALPH · 2010 to 2017
$3.1M
Smartphone for molecular cancer diagnostic in AfricaUH3CA202637 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI CHABNER, BRUCE ALLAN, WEISSLEDER, MD, PHD, RALPH · 2018 to 2020
$2.9M
Multiplexed analysis of exosomes in cancer nano therapyR01CA204019 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI WEISSLEDER, MD, PHD, RALPH · 2016 to 2020
$1.9M
Novel nano-plasmonic technology for quantitative analysis of cancer exosomesK99CA201248 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI IM, HYUNGSOON · 2015 to 2016
$329k
NCI NIH HHS K12 CA087723NCI NIH HHS K99 CA201248NCI NIH HHS R01 CA204019NCI NIH HHS R01 CA229777NCI NIH HHS T32 CA079443NCI NIH HHS U01 CA233360NCI NIH HHS UH3 CA202637NIBIB NIH HHS R01 EB010011
6 · The paper itself

Abstract

Lens-free digital in-line holography (LDIH) is a promising microscopic tool that overcomes several drawbacks (e.g., limited field of view) of traditional lens-based microcopy. However, extensive computation is required to reconstruct object images from the complex diffraction patterns produced by LDIH. This limits LDIH utility for point-of-care applications, particularly in resource limited settings. We describe a deep transfer learning (DTL) based approach to process LDIH images in the context of cellular analyses. Specifically, we captured holograms of cells labeled with molecular-specific microbeads and trained neural networks to classify these holograms without reconstruction. Using raw holograms as input, the trained networks were able to classify individual cells according to the number of cell-bound microbeads. The DTL-based approach including a VGG19 pretrained network showed robust performance with experimental data. Combined with the developed DTL approach, LDIH could be realized as a low-cost, portable tool for point-of-care diagnostics.

Indexed as

AlgorithmsDeep LearningBiomarkers, TumorHolographyHumansImage EnhancementImage Processing, Computer-AssistedMachine LearningNeoplasmsNeural Networks, ComputerPathology, MolecularTumor Cells, CulturedBiomarkers, Tumor

Identifiers

PMID30451953
PMCPMC6242900
OpenAlexW2949965507

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.