Evidence map›Paper›PMID 30451872›Full record

ArticleScientific reports2018

Comparative genome-wide analysis of WRKY transcription factors in two Asian legume crops: Adzuki bean and Mung bean.

Richa Srivastava, Sanjeev Kumar, Yasufumi Kobayashi, Kazutaka Kusunoki, Prateek Tripathi, Yuriko Kobayashi, Hiroyuki Koyama, Lingaraj Sahoo

Abstract readComparative Study
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Plant signaling & behavior · 2026
    Article
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  3. Article
  4. Article
  5. Article
  6. Article
  7. Genome and Transcriptome-Wide Analysis ofInternational journal of molecular sciences · 2022
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Isolation and characterization ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  13. Article
  14. Article
  15. Research Progress and Perspective on Drought Stress in Legumes: A Review.International journal of molecular sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Richa SrivastavaDepartment of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, 781039, India.ORCID http://orcid.org/0000-0002-4515-2329
Sanjeev KumarDepartment of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, 781039, India.
Yasufumi KobayashiJapan International Research Center for Agricultural Sciences Biological Resources, Post-Harvest Division, 1-1 Ohwashi, Tsukuba, Ibaraki, 305-8686, Japan.
Kazutaka KusunokiFaculty of Applied Biological Sciences, Gifu University, 1-1, Yanagido, 501-1193, Gifu, Japan.ORCID http://orcid.org/0000-0001-8221-4587
Prateek TripathiDepartment of Cell and Molecular Biology, The Scripps Research Institute, La Jolla, CA, 92037, USA.ORCID http://orcid.org/0000-0002-0958-2428
Yuriko KobayashiFaculty of Applied Biological Sciences, Gifu University, 1-1, Yanagido, 501-1193, Gifu, Japan.
Hiroyuki KoyamaFaculty of Applied Biological Sciences, Gifu University, 1-1, Yanagido, 501-1193, Gifu, Japan.
Lingaraj SahooDepartment of Biosciences and Bioengineering, Indian Institute of Technology Guwahati, Guwahati, 781039, India. ls@iitg.ac.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The seminal participation of WRKY transcription factors in plant development, metabolism and in the governance of defense mechanism implicated their gaining importance for genomic and functional studies. The recent release of draft genome sequences of two legume crops, Adzuki bean (Vigna angularis) and Mung bean (Vigna radiata) has paved the way for characterization of WRKY gene family in these crops. We found 84 WRKY genes in Adzuki bean (VaWRKY) and 85 WRKY genes in Mung bean (VrWRKY). Based on the phylogenetic analysis, VaWRKY genes were classified into three groups with 15 members in Group I, 56 members in Group II, and 13 members in Group III, which was comparable to VrWRKY distribution in Mung bean, 16, 56 and 13 members in Group I, II and III, respectively. The few tandem and segmental duplication events suggested that recent duplication plays no prominent role in the expansion VaWRKY and VrWRKY genes. The illustration of gene-structure and their encoded protein-domains further revealed the nature of WRKY proteins. Moreover, the identification of abiotic or biotic stress-responsive cis-regulatory elements in the promoter regions of some WRKY genes provides fundamental insights for their further implementation in stress-tolerance and genetic improvement of agronomic traits.

Indexed as

Genome-Wide Association StudyAmino Acid SequenceChromosome MappingChromosomes, PlantCrops, AgriculturalExonsFabaceaeGene DuplicationGenes, PlantIntronsPlant ProteinsPromoter Regions, GeneticSequence Homology, Amino AcidSpecies SpecificityTranscription FactorsPlant ProteinsTranscription Factors

Identifiers

PMID30451872
PMCPMC6243003

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