Evidence map›Paper›PMID 30451826›Full record

ArticleNature communications2018

Molecular basis of maintaining an oxidizing environment under anaerobiosis by soluble fumarate reductase.

Sunghwan Kim, Chang Min Kim, Young-Jin Son, Jae Young Choi, Rahel K Siegenthaler, Younho Lee, Tae-Ho Jang, Jaeyoung Song, Hara Kang, Chris A Kaiser and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
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  11. A Novel, NADH-Dependent Acrylate Reductase in Vibrio harveyi.Applied and environmental microbiology · 2022
    Article
  12. Article
  13. Review
  14. Review
  15. Extracellular electron transfer powers flavinylated extracellular reductases in Gram-positive bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Sunghwan KimNew Drug Development Center, Daegu-Gyeongbuk Medical Innovation Foundation, Daegu, 41061, South Korea. sunghwan.kim@polus-global.com.
Chang Min KimCollege of Pharmacy, Chung-Ang University, 06974, Seoul, South Korea.
Young-Jin SonNew Drug Development Center, Daegu-Gyeongbuk Medical Innovation Foundation, Daegu, 41061, South Korea.
Jae Young ChoiDepartment of Biochemistry, Yeungnam University, Gyeongsan, 38541, South Korea.
Rahel K SiegenthalerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Younho LeeCollege of Pharmacy and Yonsei, Institute of Pharmaceutical Sciences, Yonsei University, 85 Songdogwahak-ro, Yeonsu-gu, Incheon, 21983, Republic of Korea.
Tae-Ho JangNew Drug Development Center, Daegu-Gyeongbuk Medical Innovation Foundation, Daegu, 41061, South Korea.
Jaeyoung SongNew Drug Development Center, Daegu-Gyeongbuk Medical Innovation Foundation, Daegu, 41061, South Korea.
Hara KangDivision of Life Sciences, College of Life Science and Bioengineering, Incheon National University, Incheon, 22012, Republic of Korea.
Chris A KaiserDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
Hyun Ho ParkCollege of Pharmacy, Chung-Ang University, 06974, Seoul, South Korea. xrayleox@cau.ac.kr.
Daegu-Gyeongbuk Medical Innovation Foundation · KRChung-Ang University · KRMassachusetts Institute of Technology · USIncheon National University · KRYeungnam University · KRYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Osm1 and Frd1 are soluble fumarate reductases from yeast that are critical for allowing survival under anaerobic conditions. Although they maintain redox balance during anaerobiosis, the underlying mechanism is not understood. Here, we report the crystal structure of a eukaryotic soluble fumarate reductase, which is unique among soluble fumarate reductases as it lacks a heme domain. Structural and enzymatic analyses indicate that Osm1 has a specific binding pocket for flavin molecules, including FAD, FMN, and riboflavin, catalyzing their oxidation while reducing fumarate to succinate. Moreover, ER-resident Osm1 can transfer electrons from the Ero1 FAD cofactor to fumarate either by free FAD or by a direct interaction, allowing de novo disulfide bond formation in the absence of oxygen. We conclude that soluble eukaryotic fumarate reductases can maintain an oxidizing environment under anaerobic conditions, either by oxidizing cellular flavin cofactors or by a direct interaction with flavoenzymes such as Ero1.

Indexed as

AnaerobiosisBinding SitesCloning, MolecularCrystallography, X-RayEscherichia coliFlavin-Adenine DinucleotideFlavin MononucleotideGene ExpressionGenetic VectorsGlycoproteinsKineticsMolecular Docking SimulationOxidation-ReductionOxidoreductases Acting on Sulfur Group DonorsProtein BindingProtein Conformation, alpha-HelicalCibacron Blue F 3GAERO1 protein, S cerevisiaeFlavin-Adenine DinucleotideFlavin MononucleotideGlycoproteinsOSM1 protein, S cerevisiaeOxidoreductases Acting on Sulfur Group DonorsRecombinant ProteinsRiboflavinSaccharomyces cerevisiae ProteinsSuccinate DehydrogenaseTriazines

Identifiers

PMID30451826
PMCPMC6242907
OpenAlexW2900868927

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.