Evidence map›Paper›PMID 30450785›Full record

ArticleMolecular genetics & genomic medicine2018

Compound heterozygous mutations in CFTR causing CBAVD in Chinese pedigrees.

Bin Yang, Xi Wang, Wei Zhang, Hongjun Li, Binbin Wang

Open access · goldAbstract read
In one paragraph

Article in Molecular genetics & genomic medicine, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Analysis of CNVs of CFTR gene in Chinese Han population with CBAVD.Molecular genetics & genomic medicine · 2020
    Article
  4. Article
  5. Article
  6. Article
  7. Asian journal of andrology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Bin YangDepartment of Urology, Union Medical College Hospital, Chinese Academy of Medical Science, Peking, Beijing, China.
Xi WangCenter for Genetics, National Research Institute for Family Planning, Haidian, Beijing, China.
Wei ZhangCenter for Genetics, National Research Institute for Family Planning, Haidian, Beijing, China.
Hongjun LiDepartment of Urology, Union Medical College Hospital, Chinese Academy of Medical Science, Peking, Beijing, China.
Binbin WangCenter for Genetics, National Research Institute for Family Planning, Haidian, Beijing, China.ORCID 0000-0002-1597-5930
China National Petroleum and Chemical Planning Institute · CNChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCongenital bilateral absence of the vas deferens (CBAVD) is an important cause of obstructive azoospermia and male infertility. Mutations of CFTR caused the majority of CBAVD cases, and ADGRG2 was recently identified as a new pathogenic gene. Yet, most of the genetic evidence came from sporadic cases, and only one mutation in CFTR can be found in patients.

methodsIn present study, we collected two CBAVD pedigrees, each having two affected male siblings. We performed whole exome sequencing on all patients and validated all potential variants by Sanger sequencing.

resultsWe excluded ADGRG2 variants but identified compound heterozygous variants of CFTR in both families (NM_000492.3:c.1210-33_1210-6GT[13]T[5] and c.4056G>C;p.Gln1352Cys in pedigree 1, c.592G>C;p.Ala198Pro and c.3717G>A;p.Arg1239= in pedigree 2), which were subsequently validated by direct sequencing. c.1210-33_1210-6GT[13]T[5] (also known as IVS8-T5-TG13) was a known disease-causing variant causing the skipping of exon 9 of CFTR and inherited from the proband's mother. p.Gln1352Cys and Ala198Pro were rare or novel in public databases and predicted to be deleterious. The p.Arg1239= was a synonymous variant but located at the end of an exon, which was predicted to alter the splicing pattern.

conclusionOur study, in which compound heterozygous variants were identified in two pedigrees, provides more familial evidence that only recessive variants (homozygous or compound heterozygous) in CFTR cause CBAVD. Furthermore, whole exome sequencing may be utilized as a useful tool for mutation screening of genes causing CBAVD.

Indexed as

MutationAdultCystic Fibrosis Transmembrane Conductance RegulatorFemaleGenes, RecessiveHeterozygoteHumansMaleMale Urogenital DiseasesPedigreeReceptors, G-Protein-CoupledVas DeferensADGRG2 protein, humanCFTR protein, humanCystic Fibrosis Transmembrane Conductance RegulatorReceptors, G-Protein-CoupledCFTRcongenital bilateral absence of the vas deferenswhole exome sequencing

Identifiers

PMID30450785
PMCPMC6305631
OpenAlexW2900898588

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.