Evidence map›Paper›PMID 30449325›Full record

ArticleCancer cell2018

Actionable Activating Oncogenic ERBB2/HER2 Transmembrane and Juxtamembrane Domain Mutations.

Kanika Bajaj Pahuja, Thong T Nguyen, Bijay S Jaiswal, Kumar Prabhash, Tarjani M Thaker, Kate Senger, Subhra Chaudhuri, Noelyn M Kljavin, Aju Antony, Sameer Phalke and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in Cancer cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed, 2 pooled it
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 2 syntheses or guidelines pooled it, 167 citations in OpenAlex.

  1. Pooled it
  2. Updated guidelines for predictive biomarker testing in advanced non-small-cell lung cancer: a National Consensus of the Spanish Society of Pathology and the Spanish Society of Medical Oncology.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2020
    Guideline
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44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

34 authors at 7 institutions in 2 countries.

Kanika Bajaj PahujaMolecular Biology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Thong T NguyenMolecular Biology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Bijay S JaiswalMolecular Biology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Kumar PrabhashTata Memorial Hospital, Parel, Mumbai 400012, India.
Tarjani M ThakerCardiovascular Research Institute, University of California San Francisco, San Francisco, CA 94158, USA.
Kate SengerMolecular Biology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Subhra ChaudhuriMolecular Biology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Noelyn M KljavinMolecular Oncology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Aju AntonyDepartment of Molecular Biology, SciGenom Labs, Cochin, Kerala 682037, India.
Sameer PhalkeResearch Division, MedGenome Labs Pvt. Ltd., Bangalore, Karnataka 560099, India.
Prasanna KumarResearch Division, MedGenome Labs Pvt. Ltd., Bangalore, Karnataka 560099, India.
Marco MravicDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
Eric W StawiskiMolecular Biology Department, Genentech Inc., South San Francisco, CA 94080, USA; Bioinformatics and Computational Biology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Derek VargasResearch and Development Department, MedGenome Inc., Foster City, CA 94404, USA.
Steffen DurinckMolecular Biology Department, Genentech Inc., South San Francisco, CA 94080, USA; Bioinformatics and Computational Biology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Ravi GuptaBioinformatics Department, MeGenome Labs Pvt. Ltd., Bangalore, Karnataka 560099, India.
Arati Khanna-GuptaResearch Division, MedGenome Labs Pvt. Ltd., Bangalore, Karnataka 560099, India.
Sally E TrabuccoFoundation Medicine Inc., 150 Second Street, Cambridge, MA 02141, USA.
Ethan S SokolFoundation Medicine Inc., 150 Second Street, Cambridge, MA 02141, USA.
Ryan J HartmaierFoundation Medicine Inc., 150 Second Street, Cambridge, MA 02141, USA.
Ashish SinghDepartment of Medical Oncology, Christian Medical College and Hospital, Vellore 632004, India.
Anuradha ChouguleTata Memorial Hospital, Parel, Mumbai 400012, India.
Vaishakhi TrivediTata Memorial Hospital, Parel, Mumbai 400012, India.
Amit DuttACTREC, Tata Memorial Centre, Navi Mumbai 410210, India; Homi Bhaba National Institute, Training School Complex, Anushakti Nagar, Mumbai 400094, India.
Vijay PatilTata Memorial Hospital, Parel, Mumbai 400012, India.
Amit JoshiTata Memorial Hospital, Parel, Mumbai 400012, India.
Vanita NoronhaTata Memorial Hospital, Parel, Mumbai 400012, India.
James ZiaiPathology Department, Genentech Inc., South San Francisco, CA 94080, USA.
Sripad D BanavaliTata Memorial Hospital, Parel, Mumbai 400012, India.
Vedam RamprasadResearch Division, MedGenome Labs Pvt. Ltd., Bangalore, Karnataka 560099, India.
William F DeGradoDepartment of Pharmaceutical Chemistry, University of California San Francisco, San Francisco, CA 94158, USA.
Raphael BuenoDivision of Thoracic Surgery, The Lung Center and the International Mesothelioma Program, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
Natalia JuraCardiovascular Research Institute, University of California San Francisco, San Francisco, CA 94158, USA; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA 94158, USA.
Somasekar SeshagiriMolecular Biology Department, Genentech Inc., South San Francisco, CA 94080, USA. Electronic address: sekar@gene.com.
Tata Memorial Hospital · INSciGenom Labs (India) · INUniversity of California, San Francisco · USFoundation Medicine (United States)Brigham and Women's Hospital · USChristian Medical College & Hospital · INMolecular Oncology (United States) · US

Funding

Deciphering the relationship between structure, dynamics and function in helical bundle proteinsR35GM122603 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI WILLIAM DEGRADO · 2017 to 2026
$7.1M
A Multiscale Model of Protein Mediated Changes in membrane MorphologyR01GM117593 · NIGMS · COLORADO STATE UNIVERSITY · PI ZHOU, YONGCHENG · 2015 to 2019
$1.8M
Structural and Functional Studies of HER Receptor Tyrosine KinasesR01GM109176 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JURA, NATALIA · 2014 to 2018
$1.8M
Deciphering Molecular Determinants of Activation in the HER2/HER3 Receptor ComplexF32CA216928 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI THAKER, TARJANI MAHESH · 2017 to 2018
$86k
Howard Hughes Medical InstituteNCI NIH HHS F32 CA216928NIGMS NIH HHS R01 GM109176NIGMS NIH HHS R01 GM117593NIGMS NIH HHS R35 GM122603
6 · The paper itself

Abstract

Deregulated HER2 is a target of many approved cancer drugs. We analyzed 111,176 patient tumors and identified recurrent mutations in HER2 transmembrane domain (TMD) and juxtamembrane domain (JMD) that include G660D, R678Q, E693K, and Q709L. Using a saturation mutagenesis screen and testing of patient-derived mutations we found several activating TMD and JMD mutations. Structural modeling and analysis showed that the TMD/JMD mutations function by improving the active dimer interface or stabilizing an activating conformation. Further, we found that HER2 G660D employed asymmetric kinase dimerization for activation and signaling. Importantly, anti-HER2 antibodies and small-molecule kinase inhibitors blocked the activity of TMD/JMD mutants. Consistent with this, a G660D germline mutant lung cancer patient showed remarkable clinical response to HER2 blockade.

Indexed as

AdultAnimalsAntineoplastic AgentsCell Line, TumorErb-b2 Receptor Tyrosine KinasesFemaleHumansLung NeoplasmsMaleMiceMice, Inbred BALB CMiddle AgedMolecular Dynamics SimulationMutationProtein ConformationProtein DomainsAntineoplastic AgentsERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesProtein Kinase Inhibitorsanti-HER2 antibodiesERBB2 activationERBB2/HER2ERBB2 structureHER2 germline mutationHER2 kinase inhibitorsHER2 somatic mutationjuxtamembrane (JMD) domain mutationtransmembrane domain (TMD) mutation

Identifiers

PMID30449325
PMCPMC6248889
OpenAlexW2898351957

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.