ReviewTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2019
Prospects of pan-genomics in barley.
Review in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
26 citing papers in PubMed, 55 citations in OpenAlex.
- Genome-wide identification and functional characterisation of the EDS1 gene family reveals evolutionary conservation and stress-responsive regulatory roles in barley.Scientific reports · 2026Article
- Impact of wheat GRF4-GIF1 morphogenic regulators on transformation and genome editing efficiency in elite barley cultivars.Frontiers in plant science · 2026Article
- ABA-induced alternative splicing drives transcriptomic reprogramming for drought tolerance in barley.BMC plant biology · 2025Article
- Identification and Functional Characterization of Abiotic Stress Tolerance-RelatedInternational journal of molecular sciences · 2024Article
- Identification and validation of new MADS-box homologous genes in 3010 rice pan-genome.Plant cell reports · 2023Article
- Metal tolerance gene family in barley: an in silico comprehensive analysis.Journal of applied genetics · 2023Article
- Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley.International journal of molecular sciences · 2023Article
- Genome-wide association analysis provides insights into the genetic basis of photosynthetic responses to low-temperature stress in spring barley.Frontiers in plant science · 2023Article
- Article
- The treasure inside barley seeds: microbial diversity and plant beneficial bacteria.Environmental microbiome · 2021Article
- Genome-Wide Characterization of WRKY Transcription Factors Revealed Gene Duplication and Diversification in Populations of Wild to Domesticated Barley.International journal of molecular sciences · 2021Article
- EORNA, a barley gene and transcript abundance database.Scientific data · 2021Article
- Highly efficient and genotype-independent barley gene editing based on anther culture.Plant communications · 2021Article
- Building pan-genome infrastructures for crop plants and their use in association genetics.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021Review
- Genome-wide diversity analysis of TCP transcription factors revealed cases of selection from wild to cultivated barley.Functional & integrative genomics · 2021Article
- Article
- Identifying barley pan-genome sequence anchors using genetic mapping and machine learning.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- A Revolution toward Gene-Editing Technology and Its Application to Crop Improvement.International journal of molecular sciences · 2020Review
- Fine mapping of leaf rust resistance gene Rph13 from wild barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- The contribution of cis- and trans-acting variants to gene regulation in wild and domesticated barley under cold stress and control conditions.Journal of experimental botany · 2020Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
4 authors at 2 institutions in 1 country.
Funding
Abstract
The concept of a pan-genome refers to intraspecific diversity in genome content and structure, encompassing both genes and intergenic space. Pan-genomic studies employ a combination of de novo sequence assembly and reference-based alignment to discover and genotype structural variants. The large size and complex structure of Triticeae genomes were for a long time an obstacle for genomic research in barley and its relatives. Now that a reference genome is available, computational pipelines for high-quality sequence assembly are in place, and sequence costs continue to drop, investigations into the structural diversity of the barley genome seem within reach. Here, we review the recent progress on pan-genomics in the model grass Brachypodium distachyon, and the cereal crops rice and maize, and devise a multi-tiered strategy for a pan-genome project in barley. Our design involves: (1) the construction of high-quality de novo sequence assemblies for a small core set of representative genotypes, (2) short-read sequencing of a large diversity panel of genebank accessions to medium coverage and (3) the use of complementary methods such as chromosome-conformation capture sequencing and k-mer-based association genetics. The in silico representation of the barley pan-genome may inform about the mechanisms of structural genome evolution in the Triticeae and supplement quantitative genetics models of crop performance for better accuracy and predictive ability.
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What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.