Evidence map›Paper›PMID 30446643›Full record

ArticleNature communications2018

A hPSC-based platform to discover gene-environment interactions that impact human β-cell and dopamine neuron survival.

Ting Zhou, Tae Wan Kim, Chi Nok Chong, Lei Tan, Sadaf Amin, Zohreh Sadat Badieyan, Suranjit Mukherjee, Zaniar Ghazizadeh, Hui Zeng, Min Guo and 10 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  9. Review
  10. Pervasive environmental chemicals impair oligodendrocyte development.bioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Review
  13. Stem Cell-Derived Islets for Type 2 Diabetes.International journal of molecular sciences · 2022
    Review
  14. Persistent organic pollutants and β-cell toxicity: a comprehensive review.American journal of physiology. Endocrinology and metabolism · 2022
    Review
  15. Review
  16. Review
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 3 institutions in 2 countries.

Ting ZhouDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Tae Wan KimThe Center for Stem Cell Biology, Sloan-Kettering Institute for Cancer Research, New York, NY, 10065, USA.
Chi Nok ChongDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Lei TanDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Sadaf AminDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Zohreh Sadat BadieyanDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Suranjit MukherjeeDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Zaniar GhazizadehDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Hui ZengDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Min GuoDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Miguel CrespoDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Tuo ZhangGenomic Resource Core Facility, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.ORCID http://orcid.org/0000-0001-5396-918X
Reyn KenyonDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Christopher L RobinsonDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Effie ApostolouDepartment of Medicine, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Hui WangSchool of Public health, Shanghai Jiao Tong University, School of Medicine, Shanghai, 200000, China.
Jenny Zhaoying XiangGenomic Resource Core Facility, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Todd EvansDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA.
Lorenz StuderThe Center for Stem Cell Biology, Sloan-Kettering Institute for Cancer Research, New York, NY, 10065, USA. studerl@mskcc.org.
Shuibing ChenDepartment of Surgery, Weill Cornell Medical College, 1300 York Ave, New York, 10065, NY, USA. shc2034@med.cornell.edu.
Cornell University · USKettering University · USShanghai Jiao Tong University · CN

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Elisa de Stanchina · 1985 to 2026
$347.4M
Novel strategies for induction of aging in human PSC-derived lineages for modeling Alzheimer's DiseaseR01AG054720 · NIA · SLOAN-KETTERING INST CAN RESEARCH · PI Doron Betel, LORENZ P. STUDER · 2017 to 2026
$4.5M
Studying the Progression and Regression of Beta Cell Dysfunction in Type 2 DiabetDP2DK098093 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, SHUIBING · 2012 to 2017
$2.6M
Studies of the initiation and progression of small cell lung cancer using cells derived by differentiation from human pluripotent stem cellsU01CA224326 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI VARMUS, HAROLD E. · 2018 to 2022
$2.4M
Discovery of T1DM Associated Functional Variants in Human Pancreatic Beta Cell Development and SurvivalDP3DK111907 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, SHUIBING · 2016 to 2016
$2.0M
A High Throughput Screening to Identify Compounds Rescuing Human Pancreatic Beta Cell Function in Diabetic ConditionsR01DK116075 · NIDDK · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHEN, SHUIBING · 2018 to 2020
$1.3M
NCI NIH HHS P30 CA008748NCI NIH HHS U01 CA224326NIA NIH HHS R01 AG054720NIDDK NIH HHS DP2 DK098093NIDDK NIH HHS DP3 DK111907NIDDK NIH HHS R01 DK116075
6 · The paper itself

Abstract

Common disorders, including diabetes and Parkinson's disease, are caused by a combination of environmental factors and genetic susceptibility. However, defining the mechanisms underlying gene-environment interactions has been challenging due to the lack of a suitable experimental platform. Using pancreatic β-like cells derived from human pluripotent stem cells (hPSCs), we discovered that a commonly used pesticide, propargite, induces pancreatic β-cell death, a pathological hallmark of diabetes. Screening a panel of diverse hPSC-derived cell types we extended this observation to a similar susceptibility in midbrain dopamine neurons, a cell type affected in Parkinson's disease. We assessed gene-environment interactions using isogenic hPSC lines for genetic variants associated with diabetes and Parkinson's disease. We found GSTT1

Indexed as

Gene-Environment InteractionAnimalsCell DeathCell DifferentiationCyclohexanesDiabetes MellitusDopaminergic NeuronsGlutathione TransferaseHumansInsulin-Secreting CellsMesencephalonMiceModels, BiologicalParkinson DiseasePesticidesPluripotent Stem CellsCyclohexanesglutathione S-transferase T1Glutathione TransferaseOmitePesticides

Identifiers

PMID30446643
PMCPMC6240096
OpenAlexW2900908402

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.