Evidence map›Paper›PMID 30446624›Full record

ArticleMolecular cancer research : MCR2019

Mitochondrial DNA Mutations are Associated with Ulcerative Colitis Preneoplasia but Tend to be Negatively Selected in Cancer.

Kathryn T Baker, Daniela Nachmanson, Shilpa Kumar, Mary J Emond, Cigdem Ussakli, Teresa A Brentnall, Scott R Kennedy, Rosa Ana Risques

Open access · greenAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Role of Mitochondria in Inflammatory Bowel Diseases: A Systematic Review.International journal of molecular sciences · 2023
    Pooled it
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  7. Mitochondrial function and gastrointestinal diseases.Nature reviews. Gastroenterology & hepatology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Kathryn T BakerDepartment of Pathology, University of Washington, Seattle, Washington.ORCID 0000-0002-8778-8413
Daniela NachmansonDepartment of Pathology, University of Washington, Seattle, Washington.ORCID 0000-0001-9792-379X
Shilpa KumarDepartment of Pathology, University of Washington, Seattle, Washington.ORCID 0000-0002-2403-9546
Mary J EmondDepartment of Biostatistics, University of Washington, Seattle, Washington.
Cigdem UssakliDepartment of Pathology, University of Washington, Seattle, Washington.
Teresa A BrentnallDivision of Gastroenterology, Department of Medicine, University of Washington, Seattle, Washington.
Scott R KennedyDepartment of Pathology, University of Washington, Seattle, Washington.ORCID 0000-0002-4444-1145
Rosa Ana RisquesDepartment of Pathology, University of Washington, Seattle, Washington. rrisques@uw.edu.ORCID 0000-0002-0291-1858
University of Washington · US

Funding

Clonally Expanded Mutations Identify Cancer Precursors in Chronic InflammationR01CA160674 · NCI · UNIVERSITY OF WASHINGTON · PI BRENTNALL, TERESA A, LOEB, LAWRENCE A · 2012 to 2016
$2.8M
Molecular Medicine Training ProgramT32GM095421 · NIGMS · UNIVERSITY OF WASHINGTON · PI HAWN, THOMAS R, LILES, W. CONRAD · 2011 to 2020
$1.6M
Mitochondrial biomarkers for early detection of cancer in ulcerative colitisR01CA181308 · NCI · UNIVERSITY OF WASHINGTON · PI RISQUES, ROSA ANA · 2014 to 2018
$1.4M
NCI NIH HHS R01 CA160674NCI NIH HHS R01 CA181308NIGMS NIH HHS T32 GM095421
6 · The paper itself

Abstract

The role of mitochondrial DNA (mtDNA) mutations in cancer remains controversial. Ulcerative colitis is an inflammatory bowel disease that increases the risk of colorectal cancer and involves mitochondrial dysfunction, making it an ideal model to study the role of mtDNA in tumorigenesis. Our goal was to comprehensively characterize mtDNA mutations in ulcerative colitis tumorigenesis using Duplex Sequencing, an ultra-accurate next-generation sequencing method. We analyzed 46 colon biopsies from non-ulcerative colitis control patients and ulcerative colitis patients with and without cancer, including biopsies at all stages of dysplastic progression. mtDNA was sequenced at a median depth of 1,364x. Mutations were classified by mutant allele frequency: clonal > 0.95, subclonal 0.01-0.95, and very low frequency (VLF) < 0.01. We identified 208 clonal and subclonal mutations and 56,764 VLF mutations. Mutations were randomly distributed across the mitochondrial genome. Clonal and subclonal mutations increased in number and pathogenicity in early dysplasia, but decreased in number and pathogenicity in cancer. Most clonal, subclonal, and VLF mutations were C>T transitions in the heavy strand of mtDNA, which likely arise from DNA replication errors. A subset of VLF mutations were C>A transversions, which are probably due to oxidative damage. VLF transitions and indels were less abundant in the non-D-loop region and decreased with progression. Our results indicate that mtDNA mutations are frequent in ulcerative colitis preneoplasia but negatively selected in cancers. IMPLICATIONS: While mtDNA mutations might contribute to early ulcerative colitis tumorigenesis, they appear to be selected against in cancer, suggesting that functional mitochondria might be required for malignant transformation in ulcerative colitis.

Indexed as

MutationColitis, UlcerativeDisease ProgressionDNA, MitochondrialFemaleHumansMaleNeoplasmsPrecancerous ConditionsDNA, Mitochondrial

Identifiers

PMID30446624
PMCPMC6481604
OpenAlexW2901694272

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.