Evidence map›Paper›PMID 30446522›Full record

ArticleGenetics2019

Global Diversity of the Brachypodium Species Complex as a Resource for Genome-Wide Association Studies Demonstrated for Agronomic Traits in Response to Climate.

Pip B Wilson, Jared C Streich, Kevin D Murray, Steve R Eichten, Riyan Cheng, Nicola C Aitken, Kurt Spokas, Norman Warthmann, Sean P Gordon, Accession Contributors and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.8field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Pan-Genome miRNomics inPlants (Basel, Switzerland) · 2021
    Article
  8. Article
  9. Genetic and Methylome Variation in TurkishInternational journal of molecular sciences · 2020
    Article
  10. Extending the Genotype inG3 (Bethesda, Md.) · 2020
    Article
  11. Article
  12. Genetic Variation for Seed Metabolite Levels inInternational journal of molecular sciences · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Pip B WilsonThe ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 200, Australia.
Jared C StreichThe ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 200, Australia.ORCID 0000-0003-4861-1188
Kevin D MurrayThe ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 200, Australia.
Steve R EichtenThe ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 200, Australia.
Riyan ChengThe ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 200, Australia.
Nicola C AitkenThe ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 200, Australia.
Kurt SpokasSoil and Water Management, Agricultural Research Service, United States Department of Agricutlture (USDA), St. Paul, Minnesota 55108.
Norman WarthmannThe ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 200, Australia.
Sean P GordonDepartment of Energy, Joint Genome Institute, Walnut Creek, California 94598.
Accession Contributors
John P VogelDepartment of Energy, Joint Genome Institute, Walnut Creek, California 94598.
Justin O BorevitzThe ARC Centre of Excellence in Plant Energy Biology, Research School of Biology, Australian National University, Canberra, Australian Capital Territory 200, Australia Justin.borevitz@anu.edu.au.ORCID 0000-0001-8408-3699
ARC Centre of Excellence in Plant Energy Biology · AUAustralian National University · AUJoint Genome Institute · USAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The development of model systems requires a detailed assessment of standing genetic variation across natural populations. The Brachypodium species complex has been promoted as a plant model for grass genomics with translation to small grain and biomass crops. To capture the genetic diversity within this species complex, thousands of Brachypodium accessions from around the globe were collected and genotyped by sequencing. Overall, 1897 samples were classified into two diploid or allopolyploid species, and then further grouped into distinct inbred genotypes. A core set of diverse

Indexed as

AcclimatizationLife History TraitsPolymorphism, GeneticBrachypodiumGenome, PlantGenome-Wide Association StudyPlant BreedingQuantitative Trait, Heritableagronomic traitsBrachypodium distachyonclimate changeclimate simulationecogenomicsgenome-wide association studiesgenotypingplant physiologypopulation genetics

Identifiers

PMID30446522
PMCPMC6325704
OpenAlexW2901004591

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.