Evidence map›Paper›PMID 30445965›Full record

ArticleMicrobial cell factories2018

Characterization of a novel N-acylhomoserine lactonase, AidP, from Antarctic Planococcus sp.

Wah Seng See-Too, Peter Convey, David A Pearce, Kok-Gan Chan

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Cold-Adapted Proteases: An Efficient and Energy-Saving Biocatalyst.International journal of molecular sciences · 2023
    Review
  6. Article
  7. Article
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  9. Review
  10. Article
  11. Article
  12. Review
  13. Review
  14. Frontiers in microbiology · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 3 countries.

Wah Seng See-TooDivision of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia.
Peter ConveyNational Antarctic Research Centre, IPS Building, University Malaya, 50603, Kuala Lumpur, Malaysia.
David A PearceNational Antarctic Research Centre, IPS Building, University Malaya, 50603, Kuala Lumpur, Malaysia.
Kok-Gan ChanDivision of Genetics and Molecular Biology, Institute of Biological Sciences, Faculty of Science, University of Malaya, 50603, Kuala Lumpur, Malaysia. kokgan@um.edu.my.ORCID http://orcid.org/0000-0002-1883-1115
British Antarctic Survey · GBJiangsu University · CNUniversity of Malaya · MY

Funding

NERC core funding AdaptationNERC core funding BiodiversityNERC core funding EvolutionUniversity of Malaya High Impact Research Grants A-000001-50001University of Malaya High Impact Research Grants H-50001-A000027University of Malaya Research Grants GA001-2016University of Malaya Research Grants GA002-2016University of Malaya Research Grants PG203-2016A
6 · The paper itself

Abstract

backgroundN-acylhomoserine lactones (AHLs) are well-studied signalling molecules produced by some Gram-negative Proteobacteria for bacterial cell-to-cell communication or quorum sensing. We have previously demonstrated the degradation of AHLs by an Antarctic bacterium, Planococcus versutus L10.15

resultsRapid resolution liquid chromatography analysis indicated that purified AidP possesses high AHL-degrading activity on unsubstituted, and 3-oxo substituted homoserine lactones. Liquid chromatography-mass spectrometry analysis confirmed that AidP functions as an AHL lactonase that hydrolyzes the ester bond of the homoserine lactone ring of AHLs. Multiple sequence alignment analysis and phylogenetic analysis suggested that the aidP gene encodes a novel AHL lactonase enzyme. The amino acid composition analysis of aidP and the homologous genes suggested that it might be a cold-adapted enzyme, however, the optimum temperature is 28 °C, even though the thermal stability is low (reduced drastically above 32 °C). Branch-site analysis of several aidP genes of Planococcus sp. branch on the phylogenetic trees also showed evidence of episodic positive selection of the gene in cold environments. Furthermore, we demonstrated the effects of covalent and ionic bonding, showing that Zn

conclusionWe demonstrated that AidP is effective in attenuating the pathogenicity of P. carotovorum, a plant pathogen that causes soft-rot disease. This anti-quorum sensing agent is an enzyme with low thermal stability that degrades the bacterial signalling molecules (AHLs) that are produced by many pathogens. Since the enzyme is most active below human body temperature (below 28 °C), and lose its activity drastically above 32 °C, the results of a pectinolytic inhibition assay using Chinese cabbage indicated the potential of this anti-quorum sensing agent to be safely applied in the field trials.

Indexed as

4-ButyrolactoneAmino Acid SequenceAntarctic RegionsBacterial ProteinsCarboxylic Ester HydrolasesModels, MolecularPectinsPectobacterium carotovorumPlanococcus BacteriaQuorum SensingSequence Analysis, ProteinSubstrate Specificity4-ButyrolactoneBacterial ProteinsCarboxylic Ester Hydrolaseshomoserine lactoneN-acyl homoserine lactonasePectinsEpisodic positive selectionPectobacteriumQuorum quenchingSoft-rot disease

Identifiers

PMID30445965
PMCPMC6240239
OpenAlexW2900663569

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.