Evidence map›Paper›PMID 30445613›Full record

ArticleGlycobiology2019

UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase is indispensable for oogenesis, oocyte-to-embryo transition, and larval development of the nematode Caenorhabditis elegans.

Nanako Kanaki, Ayako Matsuda, Katsufumi Dejima, Daisuke Murata, Kazuko H Nomura, Takashi Ohkura, Keiko Gengyo-Ando, Sawako Yoshina, Shohei Mitani, Kazuya Nomura

Open access · bronzeAbstract read
In one paragraph

Article in Glycobiology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. AInternational journal of molecular sciences · 2022
    Article
  3. Article
  4. DPAGT1-Mediated ProteinAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2020
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Nanako KanakiDepartment of Systems Life Sciences, Kyushu University Graduate School, Fukuoka, Japan.
Ayako MatsudaDepartment of Systems Life Sciences, Kyushu University Graduate School, Fukuoka, Japan.
Katsufumi DejimaDepartment of Biology, Faculty of Sciences, Kyushu University, Fukuoka, Japan.
Daisuke MurataDepartment of Biology, Faculty of Sciences, Kyushu University, Fukuoka, Japan.
Kazuko H NomuraDepartment of Biology, Faculty of Sciences, Kyushu University, Fukuoka, Japan.
Takashi OhkuraDepartment of Reproductive Biology, National Research Institute for Child Health and Development, 2-10-1 Okura, Setagaya, Tokyo, Japan.
Keiko Gengyo-AndoDepartment of Physiology, Tokyo Women's Medical University School of Medicine, Tokyo, Japan.
Sawako YoshinaDepartment of Physiology, Tokyo Women's Medical University School of Medicine, Tokyo, Japan.
Shohei MitaniDepartment of Physiology, Tokyo Women's Medical University School of Medicine, Tokyo, Japan.
Kazuya NomuraDepartment of Biology, Faculty of Sciences, Kyushu University, Fukuoka, Japan.
Kyushu University · JPTokyo Women's Medical University · JPNational Center For Child Health and Development · JP

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
NIH HHS P40 OD010440
6 · The paper itself

Abstract

N-linked glycosylation of proteins is the most common post-translational modification of proteins. The enzyme UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase (DPAGT1) catalyses the first step of N-glycosylation, and DPAGT1 knockout is embryonic lethal in mice. In this study, we identified the sole orthologue (algn-7) of the human DPAGT1 in the nematode C. elegans. The gene activity was disrupted by RNAi and deletion mutagenesis, which resulted in larval lethality, defects in oogenesis and oocyte-to-embryo transition. Endomitotic oocytes, abnormal fusion of pronuclei, abnormal AB cell rotation, disruption of permeation barriers of eggs, and abnormal expression of chitin and chitin synthase in oocytes and eggs were the typical phenotypes observed. The results indicate that N-glycosylation is indispensable for these processes. We further screened an N-glycosylated protein database of C. elegans, and identified 456 germline-expressed genes coding N-glycosylated proteins. By examining RNAi phenotypes, we identified five germline-expressed genes showing similar phenotypes to the algn-7 (RNAi) animals. They were ribo-1, stt-3, ptc-1, ptc-2, and vha-19. We identified known congenital disorders of glycosylation (CDG) genes (ribo-1 and stt-3) and a recently found CDG gene (vha-19). The results show that phenotype analyses using the nematode could be a powerful tool to detect new CDG candidate genes and their associated gene networks.

Indexed as

AnimalsCaenorhabditis elegansEmbryo, NonmammalianOocytesOogenesisTransferases (Other Substituted Phosphate Groups)Transferases (Other Substituted Phosphate Groups)UDPacetylglucosamine-dolichyl-phosphate acetylglucosamine-1-phosphate transferase

Identifiers

PMID30445613
PMCPMC6668254
OpenAlexW2901498224

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.