ArticleBioinformatics (Oxford, England)2019
G4HunterApps.
Article in Bioinformatics (Oxford, England), 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
7 citing papers in PubMed.
- G4access identifies G-quadruplexes and their associations with open chromatin and imprinting control regions.Nature genetics · 2023Article
- G4mismatch: Deep neural networks to predict G-quadruplex propensity based on G4-seq data.PLoS computational biology · 2023Article
- The DEAD box RNA helicase DDX42 is an intrinsic inhibitor of positive-strand RNA viruses.EMBO reports · 2022Article
- Guanine quadruplexes in the RNA genome of the tick-borne encephalitis virus: their role as a new antiviral target and in virus biology.Nucleic acids research · 2022Article
- G-quadruplex DNA: a novel target for drug design.Cellular and molecular life sciences : CMLS · 2021Review
- The Evolution of G-quadruplex Structure in mRNA Untranslated Region.Evolutionary bioinformatics online · 2021Article
- A guide to computational methods for G-quadruplex prediction.Nucleic acids research · 2020Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
motivationIn order to help G4Hunter users and make it more accessible, I have developed a set of small applications within the Shiny/R framework.
resultsEach application fulfils simple tasks ranging from computing the G4Hunter score for a sequence or a list of sequence to extracting sequences with a G4Hunter score above a threshold for a sequence up to 5 Mb or a list of short sequences. The application can be installed either on the user computer within Rstudio or on a Rstudio server. AVAILABILITY AND IMPLEMENTATION: The source code for the ShinyApps is available on GitHub (https://github.com/LacroixLaurent).
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.