Evidence map›Paper›PMID 30445460›Full record

ArticleGigaScience2018

Genomes of trombidid mites reveal novel predicted allergens and laterally transferred genes associated with secondary metabolism.

Xiaofeng Dong, Kittipong Chaisiri, Dong Xia, Stuart D Armstrong, Yongxiang Fang, Martin J Donnelly, Tatsuhiko Kadowaki, John W McGarry, Alistair C Darby, Benjamin L Makepeace

Open access · goldAbstract read
In one paragraph

Article in GigaScience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 1 synthesis or guideline pooled it, 52 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Canonical terpene synthases in arthropods: Intraphylum gene transfer.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
  7. Article
  8. The highly improved genome ofLife science alliance · 2023
    Article
  9. Article
  10. Article
  11. Review
  12. Human follicular mites: Ectoparasites becoming symbionts.Molecular biology and evolution · 2022
    Article
  13. Article
  14. Article
  15. Targeted capture and sequencing of Orientia tsutsugamushi genomes from chiggers and humans.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2021
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Xiaofeng DongInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom.
Kittipong ChaisiriInstitute of Infection & Global Health, University of Liverpool, L3 5RF, United Kingdom.
Dong XiaInstitute of Infection & Global Health, University of Liverpool, L3 5RF, United Kingdom.
Stuart D ArmstrongInstitute of Infection & Global Health, University of Liverpool, L3 5RF, United Kingdom.
Yongxiang FangInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom.
Martin J DonnellyDepartment of Vector Biology, Liverpool School of Tropical Medicine, Liverpool L3 5QA, United Kingdom.
Tatsuhiko KadowakiDepartment of Biological Sciences, Xi'an Jiaotong-Liverpool University, Suzhou 215123, China.
John W McGarryInstitute of Veterinary Science, University of Liverpool, Liverpool L3 5RP, United Kingdom.
Alistair C DarbyInstitute of Integrative Biology, University of Liverpool, Liverpool L69 7ZB, United Kingdom.
Benjamin L MakepeaceInstitute of Infection & Global Health, University of Liverpool, L3 5RF, United Kingdom.
University of Liverpool · GBJiangsu Normal University · CNLiverpool School of Tropical Medicine · GBRoyal Veterinary College · GBXi’an Jiaotong-Liverpool University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Trombidid mites have a unique life cycle in which only the larval stage is ectoparasitic. In the superfamily Trombiculoidea ("chiggers"), the larvae feed preferentially on vertebrates, including humans. Species in the genus Leptotrombidium are vectors of a potentially fatal bacterial infection, scrub typhus, that affects 1 million people annually. Moreover, chiggers can cause pruritic dermatitis (trombiculiasis) in humans and domesticated animals. In the Trombidioidea (velvet mites), the larvae feed on other arthropods and are potential biological control agents for agricultural pests. Here, we present the first trombidid mites genomes, obtained both for a chigger, Leptotrombidium deliense, and for a velvet mite, Dinothrombium tinctorium. Results: Sequencing was performed using Illumina technology. A 180 Mb draft assembly for D. tinctorium was generated from two paired-end and one mate-pair library using a single adult specimen. For L. deliense, a lower-coverage draft assembly (117 Mb) was obtained using pooled, engorged larvae with a single paired-end library. Remarkably, both genomes exhibited evidence of ancient lateral gene transfer from soil-derived bacteria or fungi. The transferred genes confer functions that are rare in animals, including terpene and carotenoid synthesis. Thirty-seven allergenic protein families were predicted in the L. deliense genome, of which nine were unique. Preliminary proteomic analyses identified several of these putative allergens in larvae. Conclusions: Trombidid mite genomes appear to be more dynamic than those of other acariform mites. A priority for future research is to determine the biological function of terpene synthesis in this taxon and its potential for exploitation in disease control.

Indexed as

GenomeAlkyl and Aryl TransferasesAllergensAnimalsArthropod ProteinsBacteriaBacterial ProteinsChromatography, High Pressure LiquidFungal ProteinsFungiGene Transfer, HorizontalLarvaMitesOpsinsPhylogenySalivary Proteins and PeptidesAlkyl and Aryl TransferasesAllergensArthropod ProteinsBacterial ProteinsFungal ProteinsOpsinsSalivary Proteins and Peptidesterpene synthase

Identifiers

PMID30445460
PMCPMC6275457
OpenAlexW2793277192

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.