Evidence map›Paper›PMID 30444349›Full record

ArticleACS chemical biology2018

Ketoreductase Domain Dysfunction Expands Chemodiversity: Malyngamide Biosynthesis in the Cyanobacterium Okeania hirsuta.

Nathan A Moss, Tiago Leão, Michael R Rankin, Tyler M McCullough, Pingping Qu, Anton Korobeynikov, Janet L Smith, Lena Gerwick, William H Gerwick

Abstract read
In one paragraph

Article in ACS chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Algae: A Robust Living Material Against Cancer.International journal of nanomedicine · 2023
    Review
  8. Review
  9. Article
  10. Discovery of Cyanobacterial Natural Products Containing Fatty Acid Residues*.Angewandte Chemie (International ed. in English) · 2021
    Article
  11. Article
  12. Article
  13. Draft Genome Sequence ofMicrobiology resource announcements · 2020
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Nathan A MossCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.
Tiago LeãoCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.
Michael R RankinDepartment of Biological Chemistry, Life Sciences Institute , University of Michigan , 210 Washtenaw Avenue , Ann Arbor , Michigan 48109 , United States.
Tyler M McCulloughDepartment of Biological Chemistry, Life Sciences Institute , University of Michigan , 210 Washtenaw Avenue , Ann Arbor , Michigan 48109 , United States.
Pingping QuDepartment of Biological Sciences , University of Southern California , 3616 Trousdale Parkway , Los Angeles , California 90089 , United States.
Anton KorobeynikovCenter for Algorithmic Biotechnology , St. Petersburg State University , Saint Petersburg 198504 , Russia.
Janet L SmithDepartment of Biological Chemistry, Life Sciences Institute , University of Michigan , 210 Washtenaw Avenue , Ann Arbor , Michigan 48109 , United States.ORCID 0000-0002-0664-9228
Lena GerwickCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.ORCID 0000-0001-6108-9000
William H GerwickCenter for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography , University of California, San Diego , 9500 Gilman Drive , La Jolla , California 92093 , United States.ORCID 0000-0003-1403-4458
Scripps Institution of Oceanography · USWashtenaw Community College · USSt Petersburg University · RUUniversity of Southern California · US

Funding

Unified Computation Tools for Natural Products ResearchR01GM107550 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COTTRELL, GARRISON W, GERWICK, WILLIAM HENRY · 2013 to 2025
$8.2M
STRUCTURE AND FUNCTION OF A PURINE BIOSYNTHETIC ENZYMER01DK042303 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SMITH, JANET L. · 1990 to 2024
$6.6M
Biosynthetic Analysis of Marine Cyanobacterial PathwaysR01CA108874 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GERWICK, WILLIAM HENRY, SHERMAN, DAVID H · 2006 to 2015
$3.4M
Cellular Biotechnology Training Program (CBTP) - Years 31-35T32GM145304 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Guizhi Zhu · 2022 to 2026
$2.6M
Training Program in Marine BiotechnologyT32GM067550 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GERWICK, WILLIAM HENRY · 2004 to 2019
$2.0M
Development of an efficient cyanobacterial platform for heterologous expression and biosynthetic interrogations of natural products.R01GM118815 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI GERWICK, LENA, GERWICK, WILLIAM HENRY · 2017 to 2020
$1.2M
NCI NIH HHS R01 CA108874NIDDK NIH HHS R01 DK042303NIGMS NIH HHS R01 GM107550NIGMS NIH HHS R01 GM118815NIGMS NIH HHS T32 GM067550NIGMS NIH HHS T32 GM145304
6 · The paper itself

Abstract

Dozens of type A malyngamides, principally identified by a decorated six-membered cyclohexanone headgroup and methoxylated lyngbic acid tail, have been isolated over several decades. Their environmental sources include macro- and microbiotic organisms, including sea hares, red alga, and cyanobacterial assemblages, but the true producing organism has remained enigmatic. Many type A analogues display potent bioactivity in human-health related assays, spurring an interest in this molecular class and its biosynthetic pathway. Here, we present the discovery of the type A malyngamide biosynthetic pathway in the first sequenced genome of the cyanobacterial genus Okeania. Bioinformatic analysis of two cultured Okeania genome assemblies identified 62 and 68 kb polyketide synthase/nonribosomal peptide synthetase (PKS/NRPS) pathways with unusual loading and termination genes. NMR data of malyngamide C acetate derived from

Indexed as

Acetic AcidAmino Acid SequenceBiosynthetic PathwaysCaprylatesCarbon IsotopesCatalytic DomainComputational BiologyCyanobacteriaCyclohexanonesEnzyme InhibitorsFatty Acids, UnsaturatedGlycineModels, BiologicalPeptide SynthasesPhylogenyPolyketide SynthasesAcetic AcidancymidolCaprylatesCarbon-13Carbon IsotopesCyclohexanonesEnzyme InhibitorsFatty Acids, UnsaturatedGlycinenon-ribosomal peptide synthaseoctanoic acidPeptide SynthasesPolyketide SynthasesPyrimidines

Identifiers

PMID30444349
PMCPMC6470004
OpenAlexW2901430006

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.