Evidence map›Paper›PMID 30443898›Full record

Trial reportBritish journal of haematology2019

SET alpha and SET beta mRNA isoforms in chronic lymphocytic leukaemia.

Danielle M Brander, Daphne R Friedman, Alicia D Volkheimer, Dale J Christensen, Laura Z Rassenti, Thomas J Kipps, Eross Guadalupe, Youwei Chen, Dadong Zhang, Xi Wang and 3 more

Open access · bronzeAbstract readClinical Trial
In one paragraph

Trial report in British journal of haematology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Efficacy of an anti-cancer strategy targeting SET in canine osteosarcoma.The Journal of veterinary medical science · 2019
    Article
  10. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Danielle M BranderDuke University Medical Center, Durham, NC, USA.ORCID 0000-0002-9581-2807
Daphne R FriedmanDuke University Medical Center, Durham, NC, USA.ORCID 0000-0002-2938-5704
Alicia D VolkheimerDurham VA Medical Center, Durham, NC, USA.
Dale J ChristensenDuke University Medical Center, Durham, NC, USA.
Laura Z RassentiUniversity of California San Diego Moores Cancer Center, San Diego, CA, USA.
Thomas J KippsUniversity of California San Diego Moores Cancer Center, San Diego, CA, USA.
Eross GuadalupeDuke University Medical Center, Durham, NC, USA.
Youwei ChenDuke University Medical Center, Durham, NC, USA.
Dadong ZhangDuke University Medical Center, Durham, NC, USA.
Xi WangDuke University Medical Center, Durham, NC, USA.
Carter DavisDuke University Medical Center, Durham, NC, USA.
Kouros OwzarDuke University Medical Center, Durham, NC, USA.
J Brice WeinbergDuke University Medical Center, Durham, NC, USA.
Duke Medical Center · USUniversity of California San Diego · USDurham VA Medical Center · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI JOHN N. NORTON · 1985 to 2026
$174.8M
Inducible NOS as a Treatment Target in CLLR01CA090548 · NCI · DUKE UNIVERSITY · PI WEINBERG, JOE BRICE · 2001 to 2005
$1.3M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
NCI NIH HHS P30 CA014236NCI NIH HHS R01 CA090548NIH HHS S10 OD018164
6 · The paper itself

Abstract

Alteration in RNA splicing is implicated in carcinogenesis and progression. Mutations in spliceosome genes and alternative splicing of other genes have been noted in chronic lymphocytic leukaemia (CLL), a common B cell malignancy with heterogeneous outcomes. We previously demonstrated that differences in the amount of SET oncoprotein (a physiological inhibitor of the serine/threonine phosphatase, PP2A) is associated with clinical aggressiveness in patients with CLL. It is unknown if alternative splicing of gene transcripts regulating kinases and phosphatases affects disease pathobiology and CLL progression. We show here for the first time that mRNA levels of the alternatively spliced SET isoforms, SETA and SETB (SETα and SETβ), significantly correlate with disease severity (overall survival and time-to-first-treatment) in CLL patients. In addition, we demonstrate that relative increase of SETA to SETB mRNA can discriminate patients with a more aggressive disease course within the otherwise favourable CLL risk classifications of IGHV mutated and favourable hierarchical fluorescence in situ hybridisation groups. We validate our finding by showing comparable relationships of SET mRNA with disease outcomes using samples from an independent CLL cohort from a separate institution. These findings indicate that alternative splicing of SET, and potentially other signalling cascade molecules, influences CLL biology and patient outcomes.

Indexed as

Histone ChaperonesLeukemia, Lymphocytic, Chronic, B-CellNeoplasm ProteinsRNA, MessengerRNA, NeoplasmTranscription FactorsAdultAgedAged, 80 and overAlternative SplicingDisease-Free SurvivalDNA-Binding ProteinsFemaleHumansMaleMiddle AgedDNA-Binding ProteinsHistone ChaperonesNeoplasm ProteinsProtein IsoformsRNA, MessengerRNA, NeoplasmSET protein, humanTranscription Factorsalternative RNA splicingchronic lymphocytic leukaemiaphosphatasePP2ASET

Identifiers

PMID30443898
PMCPMC8375670
OpenAlexW2901669071

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.