Evidence map›Paper›PMID 30443823›Full record

ArticleMolecular biology reports2019

Identification of O-acetylserine(thiol)lyase (OASTL) genes in sorghum (Sorghum bicolor) and gene expression analysis under cadmium stress.

M Aydın Akbudak, Ertugrul Filiz, Senem Uylas

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In one paragraph

Article in Molecular biology reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Augmenting pH Confers toPlants (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Article
  5. Identification ofInternational journal of molecular sciences · 2025
    Article
  6. Review
  7. Comprehensive Analysis of the OASTL Gene Family in Potato (International journal of molecular sciences · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

M Aydın AkbudakDepartment of Agricultural Biotechnology, Akdeniz University, Antalya, Turkey. akbudak@akdeniz.edu.tr.ORCID http://orcid.org/0000-0002-1397-4678
Ertugrul FilizDepartment of Crop and Animal Production, Duzce University, Cilimli Vocational School, Cilimli, Duzce, Turkey. ertugrulfiliz@gmail.com.ORCID http://orcid.org/0000-0001-9636-6389
Senem UylasDepartment of Agricultural Biotechnology, Akdeniz University, Antalya, Turkey.ORCID http://orcid.org/0000-0002-7689-1677
Akdeniz University · TRDüzce Üniversitesi · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cysteine (Cys) is the first identified molecule in plant metabolism which includes both sulfur and nitrogen. It can be synthesized in three cellular compartments, containing chloroplast, cytoplasm and mitochondrion. The final step of cysteine biosynthesis is catalyzed by the O-acetylserine(thiol)lyase enzyme (OASTL, E.C. 4.2.99). In the present study, seven members of the OASTL gene family in the sorghum (Sorghum bicolor) genome were identified at a genome-wide scale and comparative bioinformatics analyses were performed between sorghum and Arabidopsis OASTLs. In all OASTL proteins, a pyridoxal-phosphate dependent domain structure (PALP, PF00291) was identified. The gene ontology annotations also revealed that all sorghum OASTL genes have KOG1252 (Cystathionine beta-synthase and related enzyme) and K01738 (cysteine synthase A) activities. In promotor sequences of OASTL genes, diverse cis-acting elements were found, including hormone and light responsiveness, abiotic stress responsiveness, and tissue-specific ones (meristem and endosperm). Sorghum OASTL genes demonstrated medium or high level expressions in anatomical parts and developmental stages based on the digital expression data. Expression of OASTL genes were also analyzed under cadmium (Cd) stress in sorghum by Real Time-quantitative PCR (RT-qPCR). The results exclusively showed that OASTL A1-2 gene was 1.12 fold up-regulated in roots, whereas cysteine synthase 26 was 2.25 fold down-regulated in leaves. The predicted 3D structure of OASTLs indicated some structural diversities as well as variations in the secondary structures.

Indexed as

ArabidopsisCadmiumCarbon-Oxygen LyasesChloroplastsCysteineGene OntologyGenome, PlantPlant LeavesPlant RootsSorghumStress, PhysiologicalSulfhydryl CompoundsTranscriptomeCadmiumCarbon-Oxygen LyasesCysteineO-acetylhomoserine (thiol)-lyaseSulfhydryl CompoundsBioinformaticsCadmiumCo-expressionCysteineSorghumSulfur

Identifiers

PMID30443823
OpenAlexW2901852593

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.