Evidence map›Paper›PMID 30443548›Full record

ArticleFrontiers in cell and developmental biology2018

Identification of Kinases and Phosphatases That Regulate ATG4B Activity by siRNA and Small Molecule Screening in Cells.

Niccolo Pengo, Krisna Prak, Joana R Costa, Christin Luft, Alexander Agrotis, Jamie Freeman, Christina A Gewinner, A W Edith Chan, David L Selwood, Janos Kriston-Vizi and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Modulation of autophagy as a therapeutic strategy forFrontiers in cellular and infection microbiology · 2022
    Review
  9. Review
  10. The insufficiency of ATG4A in macroautophagy.The Journal of biological chemistry · 2020
    Article
  11. Review
  12. Article
  13. Agephagy - Adapting Autophagy for Health During Aging.Frontiers in cell and developmental biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Niccolo PengoMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Krisna PrakMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Joana R CostaMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Christin LuftMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Alexander AgrotisMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Jamie FreemanMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Christina A GewinnerUCL Cancer Institute, University College London, London, United Kingdom.
A W Edith ChanWolfson Institute for Biomedical Research, University College London, London, United Kingdom.
David L SelwoodWolfson Institute for Biomedical Research, University College London, London, United Kingdom.
Janos Kriston-ViziMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
Robin KettelerMRC Laboratory for Molecular Cell Biology, University College London, London, United Kingdom.
University College London · GBMRC Laboratory for Molecular Cell Biology · GB

Funding

Medical Research Council MC_EX_G0800785Medical Research Council MC_PC_12024Medical Research Council MC_PC_13078Medical Research Council MR/M02492X/1Wellcome Trust
6 · The paper itself

Abstract

Autophagy protease ATG4B is a key regulator of the LC3/GABARAP conjugation system required for autophagosome formation, maturation and closure. Members of the ATG4 and the LC3/GABARAP family have been implicated in various diseases including cancer, and targeting the ATG4B protease has been suggested as a potential therapeutic anti-cancer strategy. Recently, it has been demonstrated that ATG4B is regulated by multiple post-translational modifications, including phosphorylation and de-phosphorylation. In order to identify regulators of ATG4B activity, we optimized a cell-based luciferase assay based on ATG4B-dependent release of Gaussia luciferase. We applied this assay in a proof-of-concept small molecule compound screen and identified activating compounds that increase cellular ATG4B activity. Next, we performed a high-throughput screen to identify kinases and phosphatases that regulate cellular ATG4B activity using siRNA mediated knockdown and cDNA overexpression. Of these, we provide preliminary evidence that the kinase AKT2 enhances ATG4B activity in cells. We provide all raw and processed data from the screens as a resource for further analysis. Overall, our findings provide novel insights into the regulation of ATG4B and highlight the importance of post-translational modifications of ATG4B.

Indexed as

AKT2ATG4BcDNAkinasephosphatasescreensiRNAsmall molecule

Identifiers

PMID30443548
PMCPMC6221980
OpenAlexW2898743662

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.