Evidence map›Paper›PMID 30443032›Full record

ArticleScientific reports2018

RNA sequencing-based analysis of the laying hen uterus revealed the novel genes and biological pathways involved in the eggshell biomineralization.

Nirvay Sah, Donna Lee Kuehu, Vedbar Singh Khadka, Youping Deng, Karolina Peplowska, Rajesh Jha, Birendra Mishra

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 92 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Optimizing eggshell quality in extended laying periods: Insights and strategies.Animal nutrition (Zhongguo xu mu shou yi xue hui) · 2026
    Review
  6. Article
  7. Article
  8. Article
  9. Animal nutrition (Zhongguo xu mu shou yi xue hui) · 2025
    Article
  10. Article
  11. Article
  12. Adaptive Evolution ofMicroorganisms · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Animals : an open access journal from MDPI · 2024
    Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Nirvay SahDepartment of Human Nutrition Food and Animal Sciences, University of Hawaii at Manoa, Honolulu, HI, 96822, USA.
Donna Lee KuehuDepartment of Molecular Bioscienes and Bioengineering, University of Hawaii at Manoa, Honolulu, HI, 96822, USA.
Vedbar Singh KhadkaBioinformatics core, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, 96813, USA.
Youping DengBioinformatics core, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, 96813, USA.
Karolina PeplowskaUniversity of Hawaii Cancer Center, Honolulu, HI, 96813, USA.
Rajesh JhaDepartment of Human Nutrition Food and Animal Sciences, University of Hawaii at Manoa, Honolulu, HI, 96822, USA.
Birendra MishraDepartment of Human Nutrition Food and Animal Sciences, University of Hawaii at Manoa, Honolulu, HI, 96822, USA. bmishra@hawaii.edu.ORCID http://orcid.org/0000-0002-2891-8353
University of Hawaiʻi at Mānoa · US

Funding

UH Hilo COP A&RP20GM103466 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI HELEN C TURNER · 2012 to 2026
$60.3M
The Role of gp120 on Cardiovascular Disease in People Living with HIVU54MD007601 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI Benjamin C. Fogelgren · 2017 to 2026
$59.5M
RESEARCH DESIGN AND BIOSTATISTICS COREU54MD007584 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI MOKUAU, NOREEN, SHIRAMIZU, BRUCE T · 2012 to 2018
$21.1M
NIGMS NIH HHS P20 GM103466NIMHD NIH HHS U54 MD007584NIMHD NIH HHS U54 MD007601
6 · The paper itself

Abstract

Eggshell is the outermost calcified covering of an egg that protects it from microbial invasion and physical damage, and is critical for egg quality. However, understanding of the genes/proteins and the biological pathways regulating the eggshell formation is still obscure. We hypothesized that the transcriptomic analysis of the chicken uteri using RNA-sequencing may reveal novel genes and biological pathways involved in the eggshell biomineralization. RNA-sequence analysis using uteri of laying hens at 15-20 h post-ovulation (layers, n = 3) and non-laying (non-layers, n = 3) hens was carried out. About 229 differentially expressed genes (DEGs) were up-regulated in the layers compared to the non-layers. Kyoto Encyclopedia of Genes and Genomes (KEGG) and Ingenuity Pathway Analysis (IPA) revealed more than ten novel genes and biological pathways related to calcium transport and mineralization in the uterus. Based on the enriched pathways and molecular function analysis, 12 DEGs related to eggshell mineralization were further analyzed in the uteri of layers (3 h and 15-20 h post-ovulation), non-layers and molters using qPCR. Expressions of OC-116 (regulator of mineralization), OTOP2 (modulator of cellular calcium influx), CALCB (intracellular release of Ca-ions), STC2 (increases alkaline phosphatase activity), and ATP2C2 (cellular import of Ca-ions) were significantly higher in the uteri of laying hen at 15-20 h post-ovulation. This study identified the involvement of novel genes and their proposed biological pathways in the regulation of eggshell formation.

Indexed as

Sequence Analysis, RNAAnimalsBase SequenceBiomineralizationChickensDown-RegulationEgg ShellFemaleGene Expression ProfilingGene Regulatory NetworksModels, BiologicalMolecular Sequence AnnotationMoltingOvipositionReproducibility of ResultsSignal Transduction

Identifiers

PMID30443032
PMCPMC6237962
OpenAlexW2900309674

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.