Evidence map›Paper›PMID 30442991›Full record

ArticleScientific reports2018

Tracing whale myoglobin evolution by resurrecting ancient proteins.

Yasuhiro Isogai, Hiroshi Imamura, Setsu Nakae, Tomonari Sumi, Ken-Ichi Takahashi, Taro Nakagawa, Antonio Tsuneshige, Tsuyoshi Shirai

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Unveiling an Ultrareduced State of Heme in Myoglobin.Journal of the American Chemical Society · 2025
    Article
  6. Review
  7. Engineering an Oxygen-Binding Protein for Photocatalytic COAngewandte Chemie (International ed. in English) · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Evolution, folding, and design of TIM barrels and related proteins.Current opinion in structural biology · 2021
    Review
  13. Article
  14. Article
  15. Funneled angle landscapes for helical proteins.Journal of inorganic biochemistry · 2020
    Article
  16. Stereochemistry of residues in turning regions of helical proteins.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
  17. An Idea to Explore: From How to Why: Using Evolutionary Biochemistry to Inspire Biochemistry Education.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Yasuhiro IsogaiDepartment of Pharmaceutical Engineering, Toyama Prefectural University, Imizu, Toyama, 939-0398, Japan. yisogai@pu-toyama.ac.jp.
Hiroshi ImamuraDepartment of Applied Chemistry, College of Life Sciences, Ritsumeikan University, 1-1-1 Nojihigashi, Kusatsu, Shiga, 525-8577, Japan.ORCID http://orcid.org/0000-0001-8924-747X
Setsu NakaeDepartment of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, 1266 Tamura-Cho, Nagahama, Shiga, 526-0829, Japan.
Tomonari SumiResearch Institute for Interdisciplinary Science, Okayama University, 3-1-1 Tsushima-Naka, Kita-ku, Okayama, 700-8530, Japan.
Ken-Ichi TakahashiDepartment of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, 1266 Tamura-Cho, Nagahama, Shiga, 526-0829, Japan.
Taro NakagawaDepartment of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, 1266 Tamura-Cho, Nagahama, Shiga, 526-0829, Japan.
Antonio TsuneshigeDepartment of Frontier Bioscience and Research Center for Micro-Nano Technology, Hosei University, Koganei, Tokyo, Japan.
Tsuyoshi ShiraiDepartment of Computer Bioscience, Nagahama Institute of Bio-Science and Technology, 1266 Tamura-Cho, Nagahama, Shiga, 526-0829, Japan. t_shirai@nagahama-i-bio.ac.jp.
Nagahama Institute of Bio-Science and Technology · JPHosei University · JPOkayama University · JPRitsumeikan University · JPToyama Prefectural University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Extant cetaceans, such as sperm whale, acquired the great ability to dive into the ocean depths during the evolution from their terrestrial ancestor that lived about 50 million years ago. Myoglobin (Mb) is highly concentrated in the myocytes of diving animals, in comparison with those of land animals, and is thought to play a crucial role in their adaptation as the molecular aqualung. Here, we resurrected ancestral whale Mbs, which are from the common ancestor between toothed and baleen whales (Basilosaurus), and from a further common quadrupedal ancestor between whale and hippopotamus (Pakicetus). The experimental and theoretical analyses demonstrated that whale Mb adopted two distinguished strategies to increase the protein concentration in vivo along the evolutionary history of deep sea adaptation; gaining precipitant tolerance in the early phase of the evolution, and increase of folding stability in the late phase.

Indexed as

Evolution, MolecularAmino Acid SequenceAnimalsExtinction, BiologicalMyoglobinOxygenPhylogenyProbabilityWhalesMyoglobinOxygen

Identifiers

PMID30442991
PMCPMC6237822
OpenAlexW2899896021

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.