Evidence map›Paper›PMID 30442959›Full record

ArticleScientific reports2018

A tRNA-derived RNA Fragment Plays an Important Role in the Mechanism of Arsenite -induced Cellular Responses.

Shengxuan Liu, Yu Chen, Yuping Ren, Jiehua Zhou, Junping Ren, Inhan Lee, Xiaoyong Bao

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  4. The Roles of tRNA-Derived Fragments in Cancer: Updates and Perspectives.International journal of molecular sciences · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Shengxuan LiuDepartment of Pediatrics, TongJi Hospital, TongJi Medical College, Huazhong University of Science and Technology, Huazhong, China.
Yu ChenDepartment of Pediatrics, TongJi Hospital, TongJi Medical College, Huazhong University of Science and Technology, Huazhong, China.
Yuping RenDepartment of Pediatrics, TongJi Hospital, TongJi Medical College, Huazhong University of Science and Technology, Huazhong, China.
Jiehua ZhouDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX, USA.
Junping RenDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX, USA.
Inhan LeemiRcore, Ann Arbor, MI, USA.
Xiaoyong BaoDepartment of Pediatrics, University of Texas Medical Branch, Galveston, TX, USA. xibao@utmb.edu.
The University of Texas Medical Branch at Galveston · USHuazhong University of Science and Technology · CN

Funding

Humoral Correlates of Protection Against HIVR01AI100703 · NIAID · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI RUPRECHT, RUTH MARGRIT · 2012 to 2016
$4.0M
tRNA-derived RNA Fragments (tRFs) and their Functions in Respiratory Syncytial Virus (RSV) InfectionR01AI116812 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BAO, XIAOYONG · 2016 to 2020
$1.9M
Functional Portraits of tRNA-derived Small Non-coding RNAsR21AI113771 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BAO, XIAOYONG · 2015 to 2016
$426k
Characterization of tRNA-derived RNA Fragments (tRFs) in Respiratory Syncytial ViR56AI107033 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BAO, XIAOYONG · 2014 to 2014
$387k
NIAID NIH HHS R01 AI100703NIAID NIH HHS R01 AI116812NIAID NIH HHS R21 AI113771NIAID NIH HHS R56 AI107033
6 · The paper itself

Abstract

Chronic exposure to environmental heavy metals is a worldwide health concern. It is acknowledged to be an important cause of lower respiratory tract damage in children. However, the molecular mechanisms underlying the heavy metal-induced cellular stress/toxicity are not completely understood. Small non-coding RNAs (sncRNAs), such as microRNAs (miRNA) and more recently identified tRNA-derived RNA fragments (tRFs), are critical to the posttranscriptional control of genes. We used deep sequencing to investigate whether cellular sncRNA profiles are changed by environmental heavy metals. We found that the treatment of arsenite, an important groundwater heavy metal, leads to abundant production of tRFs, that are ~30 nucleotides (nts) long and most of which correspond to the 5'-end of mature tRNAs. It is unlikely for these tRFs to be random degradation by-products, as the type of induced tRFs is heavy metal-dependent. Three most inducible tRFs and their roles in arsenite-induced cellular responses were then investigated. We identified that p65, an important transcription factor belonging to NF-κB family and also a key factor controlling inflammatory gene expression, is a regulated target of a tRF derived from 5'-end of mature tRNA encoding AlaCGC (tRF5-AlaCGC). tRF5-AlaCGC activates p65, subsequently leading to enhanced secretion of IL-8 in arsenite response. In this study, we also identified that endonuclease Dicer and angiogenin temporally control the induction of tRF5-AlaCGC, providing an insight into the control of tRF biogenesis and subsequently the prevention of cellular damage.

Indexed as

ArsenitesBase SequenceCell LineHumansInflammationMetals, HeavyRespiratory Syncytial VirusesRibonuclease IIIRibonuclease, PancreaticRNA, TransferangiogeninarseniteArsenitesMetals, HeavyRibonuclease IIIRibonuclease, PancreaticRNA, Transfer

Identifiers

PMID30442959
PMCPMC6237853
OpenAlexW2899726961

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.