Evidence map›Paper›PMID 30442116›Full record

ArticleBMC genomics2018

Mapping the Pax6 3' untranslated region microRNA regulatory landscape.

Bridget C Ryan, Kieran Lowe, Laura Hanson, Talveen Gil, Lauren Braun, Perry L Howard, Robert L Chow

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

  1. UnlockingNAR genomics and bioinformatics · 2026
    Article
  2. The history and function of a circular RNA.Nature communications · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. MiRNA Regulatory Functions in Photoreceptors.Frontiers in cell and developmental biology · 2020
    Review
  7. The Spectrum ofGenes · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Bridget C RyanDepartment of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada.
Kieran LoweDepartment of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada.
Laura HansonDepartment of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada.
Talveen GilDepartment of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada.
Lauren BraunDepartment of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada.
Perry L HowardDepartment of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 2Y2, Canada.
Robert L ChowDepartment of Biology, University of Victoria, Victoria, BC, V8W 3N5, Canada. bobchow@uvic.ca.ORCID http://orcid.org/0000-0002-9829-3838
University of Victoria · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPAX6 is a homeodomain transcription factor that acts in a highly dosage-sensitive manner to regulate the development and function of the eyes, nose, central nervous system, gut, and endocrine pancreas. Several individual microRNAs (miRNA) have been implicated in regulating PAX6 in different cellular contexts, but a more general view of how they contribute to the fine-tuning and homeostasis of PAX6 is poorly understood.

resultsHere, a comprehensive analysis of the Pax6 3' untranslated region was performed to map potential miRNA recognition elements and served as a backdrop for miRNA expression profiling experiments to identify potential cell/tissue-specific miRNA codes. Pax6 3'UTR pull-down studies identified a cohort of miRNA interactors in pancreatic αTC1-6 cells that, based on the spacing of their recognition sites in the Pax6 3'UTR, revealed 3 clusters where cooperative miRNA regulation may occur. Some of these interacting miRNAs have been implicated in α cell function but have not previously been linked to Pax6 function and may therefore represent novel PAX6 regulators.

conclusionsThese findings reveal a regulatory landscape upon which miRNAs may participate in the developmental control, fine-tuning and/or homeostasis of PAX6 levels.

Indexed as

Gene Expression Regulation3' Untranslated RegionsAnimalsBase SequenceBinding SitesCell LineFemaleGene Expression ProfilingHomeostasisMaleMice, 129 StrainMicroRNAsPAX6 Transcription Factor3' Untranslated RegionsMicroRNAsPax6 protein, mousePAX6 Transcription FactorBioinformaticsExpression profilingGene regulationmicroRNAPax6Pull-down assays

Identifiers

PMID30442116
PMCPMC6238409
OpenAlexW2901310381

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.