Evidence map›Paper›PMID 30441907›Full record

ArticleACS synthetic biology2018

Engineering Improved Photoswitches for the Control of Nucleocytoplasmic Distribution.

Andrew M Lerner, Hayretin Yumerefendi, Odessa J Goudy, Brian D Strahl, Brian Kuhlman

Abstract read
In one paragraph

Article in ACS synthetic biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Protein design accelerates the development and application of optogenetic tools.Computational and structural biotechnology journal · 2025
    Review
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Photoreaction Mechanisms of Flavoprotein Photoreceptors and Their Applications.Advances in experimental medicine and biology · 2021
    Review
  9. Article
  10. Article
  11. Engineering Optogenetic Protein Analogs.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Andrew M LernerDepartment of Biochemistry & Biophysics , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599 , United States.ORCID 0000-0003-2442-3019
Hayretin YumerefendiDepartment of Biochemistry & Biophysics , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599 , United States.
Odessa J GoudyDepartment of Biochemistry & Biophysics , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599 , United States.
Brian D StrahlDepartment of Biochemistry & Biophysics , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599 , United States.
Brian KuhlmanDepartment of Biochemistry & Biophysics , University of North Carolina at Chapel Hill , Chapel Hill , North Carolina 27599 , United States.ORCID 0000-0003-4907-9699

Funding

Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Mechanisms of chromatin and transcriptional regulationR35GM126900 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Brian D Strahl · 2018 to 2026
$5.5M
MOLECULAR AND CELLULAR BIOPHYSICS TRAINING PROGRAMT32GM008570 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KUHLMAN, BRIAN A, SLEP, KEVIN C · 1995 to 2022
$5.1M
Spatiotemporal Control of the Epigenome via Photoactivatable Nuclear LocalizationR01DA036877 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAHN, KLAUS M., KUHLMAN, BRIAN A · 2013 to 2017
$2.1M
Elucidating dynamics and function of histone H3 lysine 36 methylation and demethylation using optogenetic toolsF31GM122321 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LERNER, ANDREW · 2017 to 2018
$68k
NCI NIH HHS P30 CA016086NIDA NIH HHS R01 DA036877NIGMS NIH HHS F31 GM122321NIGMS NIH HHS R35 GM126900NIGMS NIH HHS T32 GM008570
6 · The paper itself

Abstract

Optogenetic techniques use light-responsive proteins to study dynamic processes in living cells and organisms. These techniques typically rely on repurposed naturally occurring light-sensitive proteins to control subcellular localization and activity. We previously engineered two optogenetic systems, the light activated nuclear shuttle (LANS) and the light-inducible nuclear exporter (LINX), by embedding nuclear import or export sequence motifs into the C-terminal helix of the light-responsive LOV2 domain of Avena sativa phototropin 1, thus enabling light-dependent trafficking of a target protein into and out of the nucleus. While LANS and LINX are effective tools, we posited that mutations within the LOV2 hinge-loop, which connects the core PAS domain and the C-terminal helix, would further improve the functionality of these switches. Here, we identify hinge-loop mutations that favorably shift the dynamic range (the ratio of the on- to off-target subcellular accumulation) of the LANS and LINX photoswitches. We demonstrate the utility of these new optogenetic tools to control gene transcription and epigenetic modifications, thereby expanding the optogenetic "tool kit" for the research community.

Indexed as

Amino Acid SequenceAvenaCell NucleusCytoplasmFluorescence PolarizationHeLa CellsHumansLightMutagenesisPhototropinsPlant ProteinsProtein EngineeringPhototropinsPlant Proteinsdynamic rangeLANSLINXLOV2nucleocytoplasmic shuttleoptogenetics

Identifiers

PMID30441907
PMCPMC6497050

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.