Evidence map›Paper›PMID 30440012›Full record

ArticlePloS one2018

Very long intergenic non-coding RNA transcripts and expression profiles are associated to specific childhood acute lymphoblastic leukemia subtypes.

Maxime Caron, Pascal St-Onge, Simon Drouin, Chantal Richer, Thomas Sontag, Stephan Busche, Guillaume Bourque, Tomi Pastinen, Daniel Sinnett

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Mammalian DNA Replication Timing.Cold Spring Harbor perspectives in biology · 2021
    Review
  4. Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Maxime CaronCHU Sainte-Justine Research Center, Montreal, Quebec, Canada.
Pascal St-OngeCHU Sainte-Justine Research Center, Montreal, Quebec, Canada.
Simon DrouinCHU Sainte-Justine Research Center, Montreal, Quebec, Canada.
Chantal RicherCHU Sainte-Justine Research Center, Montreal, Quebec, Canada.
Thomas SontagCHU Sainte-Justine Research Center, Montreal, Quebec, Canada.
Stephan BuscheDepartment of Human Genetics, McGill University, Montreal, Quebec, Canada.
Guillaume BourqueDepartment of Human Genetics, McGill University, Montreal, Quebec, Canada.
Tomi PastinenDepartment of Human Genetics, McGill University, Montreal, Quebec, Canada.
Daniel SinnettCHU Sainte-Justine Research Center, Montreal, Quebec, Canada.ORCID 0000-0003-3625-6676
Centre Hospitalier Universitaire Sainte-Justine · CAMcGill University · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Very long intergenic non-coding RNAs (vlincRNAs) are a novel class of long transcripts (~50 kb to 1 Mb) with cell type- or cancer-specific expression. We report the discovery and characterization of 256 vlincRNAs from a cohort of 64 primary childhood pre-B and pre-T acute lymphoblastic leukemia (cALL) samples, of which 61% are novel and specifically expressed in cALL. Validation was performed in 35 pre-B and pre-T cALL primary samples. We show that their expression is cALL immunophenotype and molecular subtype-specific and correlated with epigenetic modifications on their promoters, much like protein-coding genes. While the biological functions of these vlincRNAs are still unknown, our results suggest they could play a role in cALL etiology or progression.

Indexed as

AdolescentBiomarkers, TumorChildChild, PreschoolCohort StudiesCpG IslandsDNA MethylationEpigenesis, GeneticFemaleGene Expression Regulation, NeoplasticHumansInfantMalePrecursor B-Cell Lymphoblastic Leukemia-LymphomaPrecursor T-Cell Lymphoblastic Leukemia-LymphomaRNA, Long NoncodingBiomarkers, TumorRNA, Long Noncoding

Identifiers

PMID30440012
PMCPMC6237371
OpenAlexW2900899200

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.