Evidence map›Paper›PMID 30439934›Full record

ArticlePLoS computational biology2018

Cytoplasmic flows in starfish oocytes are fully determined by cortical contractions.

Nils Klughammer, Johanna Bischof, Nikolas D Schnellbächer, Andrea Callegari, Péter Lénárt, Ulrich S Schwarz

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 54 citations in OpenAlex.

  1. Marine Model Organisms for Mechanobiology Studies.Results and problems in cell differentiation · 2026
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  8. Fly embryo nuclei riding on two-fluid flow.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  9. Article
  10. Two-fluid dynamics and micron-thin boundary layers shape cytoplasmic flows in earlyProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  11. Review
  12. Article
  13. Review
  14. Size- and position-dependent cytoplasm viscoelasticity through hydrodynamic interactions with the cell surface.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  15. Use of Echinoderm Gametes and Early Embryos for Studying Meiosis and Mitosis.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  16. Cell cycle control during early embryogenesis.Development (Cambridge, England) · 2021
    Article
  17. Division and Regrowth of Phase-Separated Giant Unilamellar Vesicles*.Angewandte Chemie (International ed. in English) · 2021
    Article
  18. Bioimage Analysis and Cell Motility.Patterns (New York, N.Y.) · 2021
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Nils KlughammerInstitute for Theoretical Physics and BioQuant, Heidelberg University, Heidelberg, Germany.ORCID 0000-0002-8792-2459
Johanna BischofCell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID 0000-0002-5668-841X
Nikolas D SchnellbächerInstitute for Theoretical Physics and BioQuant, Heidelberg University, Heidelberg, Germany.
Andrea CallegariCell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.
Péter LénártCell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany.ORCID 0000-0002-3927-248X
Ulrich S SchwarzInstitute for Theoretical Physics and BioQuant, Heidelberg University, Heidelberg, Germany.ORCID 0000-0003-1483-640X
European Molecular Biology Laboratory · DEHeidelberg University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytoplasmic flows are an ubiquitous feature of biological systems, in particular in large cells, such as oocytes and eggs in early animal development. Here we show that cytoplasmic flows in starfish oocytes, which can be imaged well with transmission light microscopy, are fully determined by the cortical dynamics during surface contraction waves. We first show that the dynamics of the oocyte surface is highly symmetric around the animal-vegetal axis. We then mathematically solve the Stokes equation for flows inside a deforming sphere using the measured surface displacements as boundary conditions. Our theoretical predictions agree very well with the intracellular flows quantified by particle image velocimetry, proving that during this stage the starfish cytoplasm behaves as a simple Newtonian fluid on the micrometer scale. We calculate the pressure field inside the oocyte and find that its gradient is too small as to explain polar body extrusion, in contrast to earlier suggestions. Myosin II inhibition by blebbistatin confirms this conclusion, because it diminishes cell shape changes and hydrodynamic flow, but does not abolish polar body formation.

Indexed as

ActinsAlgorithmsAnimalsCytoplasmHeterocyclic Compounds, 4 or More RingsImaging, Three-DimensionalModels, TheoreticalMyosin Type IINormal DistributionOocytesPolar BodiesRotationSeawaterStarfishSurface PropertiesActinsblebbistatinHeterocyclic Compounds, 4 or More RingsMyosin Type II

Identifiers

PMID30439934
PMCPMC6264906
OpenAlexW2901768768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.