Evidence map›Paper›PMID 30431433›Full record

ArticleeLife2018

Targeted degradation of BRD9 reverses oncogenic gene expression in synovial sarcoma.

Gerard L Brien, David Remillard, Junwei Shi, Matthew L Hemming, Jonathon Chabon, Kieran Wynne, Eugène T Dillon, Gerard Cagney, Guido Van Mierlo, Marijke P Baltissen and 7 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 126 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed, 1 pooled it
8.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 1 synthesis or guideline pooled it, 214 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Synovial Sarcoma: Molecular Biology, Pathology, and Therapeutic Strategies.International journal of molecular sciences · 2026
    Review
  9. Review
  10. Review
  11. Article
  12. Review
  13. BAF complex-independent gene activation by SS18::SSX.bioRxiv : the preprint server for biology · 2026
    Article
  14. BRD9 at the crossroads of splicing, chromatin remodeling, and hematopoiesis.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2026
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 4 countries.

Gerard L BrienDepartment of Pediatric Oncology, Dana Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, United States.ORCID http://orcid.org/0000-0003-4275-7178
David RemillardDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, United States.
Junwei ShiDepartment of Cancer Biology, Abramson Family Cancer Research Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, United States.
Matthew L HemmingDepartment of Pediatric Oncology, Dana Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, United States.
Jonathon ChabonDepartment of Pediatric Oncology, Dana Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, United States.
Kieran WynneSchool of Biomolecular and Biomedical Science and Conway Institute, University College Dublin, Dublin, Ireland.
Eugène T DillonSchool of Biomolecular and Biomedical Science and Conway Institute, University College Dublin, Dublin, Ireland.
Gerard CagneySchool of Biomolecular and Biomedical Science and Conway Institute, University College Dublin, Dublin, Ireland.
Guido Van MierloDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands.
Marijke P BaltissenDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands.
Michiel VermeulenDepartment of Molecular Biology, Faculty of Science, Radboud Institute for Molecular Life Sciences, Oncode Institute, Radboud University Nijmegen, Nijmegen, The Netherlands.
Jun QiDepartment of Cancer Biology, Dana Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, United States.
Stefan FröhlingGerman Cancer Consortium, Heidelberg, Germany.
Nathanael S GrayDepartment of Cancer Biology, Dana Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, United States.ORCID https://orcid.org/0000-0001-5354-7403
James E BradnerDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, United States.
Christopher R VakocCold Spring Harbor Laboratory, Cold Spring Harbor, United States.
Scott A ArmstrongDepartment of Pediatric Oncology, Dana Farber Cancer Institute, Boston Children's Hospital and Harvard Medical School, Boston, United States.ORCID http://orcid.org/0000-0002-9099-4728
Boston Children's Hospital · USRadboud University Nijmegen · NLUniversity College Dublin · IECancer Research Institute · USCold Spring Harbor Laboratory · USGerman Cancer Research Center · DE

Funding

VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI Camila dos Santos · 1985 to 2026
$116.8M
TYROSINE KINASE ONCOGENESIS IN MYELOID LEUKEMIAP01CA066996 · NCI · DANA-FARBER CANCER INSTITUTE · PI SCOTT A ARMSTRONG · 1996 to 2026
$52.5M
BET bromodomain inhibition as targeted therapy in acute myeloid leukemiaR01CA174793 · NCI · COLD SPRING HARBOR LABORATORY · PI VAKOC, CHRISTOPHER · 2013 to 2023
$5.5M
Targeting to Epigenetic Modications in ALLR01CA176745 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI ARMSTRONG, SCOTT A, QI, JUN · 2012 to 2022
$4.2M
Dissecting the Pathogenesis of Ewing Sarcoma with Integrative GenomicsR01CA204915 · NCI · DANA-FARBER CANCER INST · PI STEGMAIER, KIMBERLY, SWEET-CORDERO, ERIC ALEJANDRO · 2017 to 2021
$2.7M
NCI NIH HHS CA066996NCI NIH HHS CA176745NCI NIH HHS CA204915NCI NIH HHS P01 CA013106NCI NIH HHS P01 CA066996NCI NIH HHS R01 CA174793NCI NIH HHS R01 CA176745NCI NIH HHS R01 CA204915
6 · The paper itself

Abstract

Synovial sarcoma tumours contain a characteristic fusion protein, SS18-SSX, which drives disease development. Targeting oncogenic fusion proteins presents an attractive therapeutic opportunity. However, SS18-SSX has proven intractable for therapeutic intervention. Using a domain-focused CRISPR screen we identified the bromodomain of BRD9 as a critical functional dependency in synovial sarcoma. BRD9 is a component of SS18-SSX containing BAF complexes in synovial sarcoma cells; and integration of BRD9 into these complexes is critical for cell growth. Moreover BRD9 and SS18-SSX co-localize extensively on the synovial sarcoma genome. Remarkably, synovial sarcoma cells are highly sensitive to a novel small molecule degrader of BRD9, while other sarcoma subtypes are unaffected. Degradation of BRD9 induces downregulation of oncogenic transcriptional programs and inhibits tumour progression in vivo. We demonstrate that BRD9 supports oncogenic mechanisms underlying the SS18-SSX fusion in synovial sarcoma and highlight targeted degradation of BRD9 as a potential therapeutic opportunity in this disease.

Indexed as

Gene Expression Regulation, NeoplasticProteolysisBromodomain Containing ProteinsDisease ProgressionHEK293 CellsHumansProtein BindingProtein DomainsRNA, MessengerSarcoma, SynovialTranscription FactorsTranscription, GeneticBRD9 protein, humanBromodomain Containing ProteinsRNA, MessengerTranscription FactorsbiochemistryBRD9cancer biologychemical biologyfusion proteinhumanSS18-SSXSWI/SNFsynovial sarcomatargeted degradation

Identifiers

PMID30431433
PMCPMC6277197
OpenAlexW2900693695

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.