Evidence map›Paper›PMID 30429372›Full record

ArticleJCI insight2018

Functional heterogeneity of human tissue-resident memory T cells based on dye efflux capacities.

Brahma V Kumar, Radomir Kratchmarov, Michelle Miron, Dustin J Carpenter, Takashi Senda, Harvey Lerner, Amy Friedman, Steven L Reiner, Donna L Farber

Abstract read
In one paragraph

Article in JCI insight, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Review
  2. Tumor-embedded Immunity and TRM Cell Functions in Cancer.Mini reviews in medicinal chemistry · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Tissue-Resident Immune Cells in Humans.Annual review of immunology · 2022
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Memory CD8iScience · 2021
    Article
  16. Article
  17. Review
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Brahma V KumarColumbia Center for Translational Immunology.
Radomir KratchmarovDepartment of Microbiology and Immunology, and.
Michelle MironColumbia Center for Translational Immunology.
Dustin J CarpenterColumbia Center for Translational Immunology.
Takashi SendaColumbia Center for Translational Immunology.
Harvey LernerLiveOnNY, New York, New York, USA.
Amy FriedmanLiveOnNY, New York, New York, USA.
Steven L ReinerDepartment of Microbiology and Immunology, and.
Donna L FarberColumbia Center for Translational Immunology.

Funding

Translational Biomarker Analytical Core (TBAC)P30DK063608 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DOMENICO ACCILI · 2003 to 2026
$36.7M
Transcriptomics and Repertoire ProfilingP01AI106697 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Donna L. Farber · 2013 to 2026
$31.3M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
NRSA Training CoreTL1TR001875 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SPANN, MARISA N, TAYLOR, JACQUELYN Y · 2016 to 2025
$8.9M
Asymmetric Lymphocyte Division in the Immune ResponseR01AI076458 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI REINER, STEVEN L · 2008 to 2019
$3.7M
Columbia University Graduate Training Program in Microbiology and ImmunologyT32AI106711 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Nicholas Arpaia, Uttiya Basu · 2014 to 2026
$2.1M
Diversifying and Regenerating T Cell FunctionR01AI113365 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REINER, STEVEN L · 2014 to 2018
$2.0M
Lung resident niches for memory CD4 T cellsR01HL116136 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FARBER, DONNA L. · 2015 to 2018
$1.6M
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Becton Dickinson LSR II Analytical Flow CytometerS10RR027050 · NCRR · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CLYNES, RAPHAEL A. · 2011 to 2011
$413k
NCATS NIH HHS TL1 TR001875NCRR NIH HHS S10 RR027050NHLBI NIH HHS R01 HL116136NIAID NIH HHS P01 AI106697NIAID NIH HHS R01 AI076458NIAID NIH HHS R01 AI113365NIAID NIH HHS T32 AI106711NIDDK NIH HHS P30 DK063608NIGMS NIH HHS T32 GM007367NIH HHS S10 OD020056
6 · The paper itself

Abstract

Tissue-resident memory T cells (TRMs) accelerate pathogen clearance through rapid and enhanced functional responses in situ. TRMs are prevalent in diverse anatomic sites throughout the human lifespan, yet their phenotypic and functional diversity has not been fully described. Here, we identify subpopulations of human TRMs based on the ability to efflux fluorescent dyes [efflux(+) TRMs] located within mucosal and lymphoid sites with distinct transcriptional profiles, turnover, and functional capacities. Compared with efflux(-) TRMs, efflux(+) TRMs showed transcriptional and phenotypic features of quiescence including reduced turnover, decreased expression of exhaustion markers, and increased proliferative capacity and signaling in response to homeostatic cytokines. Moreover, upon activation, efflux(+) TRMs secreted lower levels of inflammatory cytokines such as IFN-γ and IL-2 and underwent reduced degranulation. Interestingly, analysis of TRM subsets following activation revealed that both efflux(+) and efflux(-) TRMs undergo extensive transcriptional changes following TCR ligation but retain core TRM transcriptional properties including retention markers, suggesting that TRMs carry out effector function in situ. Overall, our results suggest a model for tissue-resident immunity wherein heterogeneous subsets have differential capacities for longevity and effector function.

Indexed as

Immunologic MemoryCD8-Positive T-LymphocytesCell ProliferationFluorescent DyesHumansLymphoid TissueMitochondriaModels, ImmunologicalPhenotypeReceptors, Antigen, T-CellTissue DistributionT-Lymphocyte SubsetsTranscriptomeFluorescent DyesReceptors, Antigen, T-CellAdaptive immunityImmunologyT cells

Identifiers

PMID30429372
PMCPMC6302950

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.