Evidence map›Paper›PMID 30428854›Full record

ArticleBMC genomics2018

Evidence for a Robertsonian fusion in Solea senegalensis (Kaup, 1858) revealed by zoo-FISH and comparative genome analysis.

Aglaya García-Angulo, Manuel A Merlo, Silvia Portela-Bens, María E Rodríguez, Emilio García, Ahmed Al-Rikabi, Thomas Liehr, Laureana Rebordinos

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  3. Genomic Characterization ofAnimals : an open access journal from MDPI · 2022
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  11. Evolution of the Proto Sex-Chromosome inInternational journal of molecular sciences · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Aglaya García-AnguloÁrea de Genética, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, 11510, Cádiz, Spain.
Manuel A MerloÁrea de Genética, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, 11510, Cádiz, Spain.
Silvia Portela-BensÁrea de Genética, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, 11510, Cádiz, Spain.
María E RodríguezÁrea de Genética, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, 11510, Cádiz, Spain.
Emilio GarcíaÁrea de Genética, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, 11510, Cádiz, Spain.
Ahmed Al-RikabiInstitut für Humangenetik, Universitätsklinikum Jena, 07743, Jena, Germany.
Thomas LiehrInstitut für Humangenetik, Universitätsklinikum Jena, 07743, Jena, Germany.
Laureana RebordinosÁrea de Genética, Facultad de Ciencias del Mar y Ambientales, Universidad de Cádiz, 11510, Cádiz, Spain. Laureana.rebordinos@uca.es.
Universidad de Cádiz · ESJena University Hospital · DE

Funding

SEQUENCE-SPECIFIC REPAIR OF ALKYLATED CELLULAR DNAR29CA051860 · NCI · NEW YORK UNIVERSITY · PI SCICCHITANO, DAVID A · 1991 to 1996
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Spanish Ministerio de Ciencia e Innovación-FEDER AGL2014-51860-C2-1-P
6 · The paper itself

Abstract

backgroundSolea senegalensis (Kaup, 1858) is a commercially important flatfish species, belonging to the Pleuronectiformes order. The taxonomy of this group has long been controversial, and the karyotype of the order presents a high degree of variability in diploid number, derived from chromosomal rearrangements such as Robertsonian fusions. Previously it has been proposed that the large metacentric chromosome of S. senegalensis arises from this kind of chromosome rearrangement and that this is a proto-sex chromosome.

resultsIn this work, the Robertsonian origin of the large metacentric chromosome of S. senegalensis has been tested by the Zoo-FISH technique applied to two species of the Soleidae family (Dicologlossa cuneata and Dagetichthys lusitanica), and by comparative genome analysis with Cynoglossus semilaevis. From the karyotypic analysis we were able to determine a chromosome complement comprising 2n = 50 (FN = 54) in D. cuneata and 2n = 42 (FN = 50) in D. lusitanica. The large metacentric painting probe gave consistent signals in four acrocentric chromosomes of the two Soleidae species; and the genome analysis proved a common origin with four chromosome pairs of C. semilaevis. As a result of the genomic analysis, up to 61 genes were annotated within the thirteen Bacterial Artificial Chromosome clones analysed.

conclusionsThese results confirm that the large metacentric chromosome of S. senegalensis originated from a Robertsonian fusion and provide new data about the chromosome evolution of S. senegalensis in particular, and of Pleuronectiformes in general.

Indexed as

Gene FusionTranslocation, GeneticAnimalsChromosome MappingFlatfishesGenomicsIn Situ Hybridization, FluorescenceKaryotypingChromosome evolutionChromosome fusionComparative chromosome paintingPleuronectiformesSenegalese sole

Identifiers

PMID30428854
PMCPMC6236887
OpenAlexW2900689370

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.