Evidence map›Paper›PMID 30428344›Full record

ArticleCell reports2018

A Lamina-Associated Domain Border Governs Nuclear Lamina Interactions, Transcription, and Recombination of the Tcrb Locus.

Shiwei Chen, Teresa Romeo Luperchio, Xianrong Wong, Europe B Doan, Aaron T Byrd, Kingshuk Roy Choudhury, Karen L Reddy, Michael S Krangel

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. An Optimized Adaptation of DamID for NGS Applications.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  6. Review
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  12. Review
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  14. Article
  15. CTCF supports preferentially short lamina-associated domains.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2022
    Article
  16. The Nuclear Lamina.Cold Spring Harbor perspectives in biology · 2022
    Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shiwei ChenDepartment of Immunology, Duke University Medical Center, Durham, NC 27710, USA.
Teresa Romeo LuperchioDepartment of Biological Chemistry, Center for Epigenetics, Johns Hopkins University, Baltimore, MD 21205, USA.
Xianrong WongDepartment of Biological Chemistry, Center for Epigenetics, Johns Hopkins University, Baltimore, MD 21205, USA.
Europe B DoanDepartment of Immunology, Duke University Medical Center, Durham, NC 27710, USA.
Aaron T ByrdDepartment of Immunology, Duke University Medical Center, Durham, NC 27710, USA.
Kingshuk Roy ChoudhuryDepartment of Biostatistics and Bioinformatics, Duke University Medical Center, Durham, NC 27710, USA.
Karen L ReddyDepartment of Biological Chemistry, Center for Epigenetics, Johns Hopkins University, Baltimore, MD 21205, USA.
Michael S KrangelDepartment of Immunology, Duke University Medical Center, Durham, NC 27710, USA. Electronic address: krang001@mc.duke.edu.
Duke Medical Center · USJohns Hopkins University · US

Funding

Duke CTSA (Composite)UL1TR001117 · NCATS · DUKE UNIVERSITY · PI BOULWARE, LEIGH E, LI, JENNIFER S · 2013 to 2017
$41.3M
BIOCHEMISTRY, CELLULAR AND MOLECULAR BIOLOGY PROGRAMT32GM007445 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREEN, RACHEL · 1985 to 2021
$24.1M
CONTROL OF TCR V BETA REARRANGEMENT &ALLELIC EXCLUSIONR01AI049934 · NIAID · DUKE UNIVERSITY · PI KRANGEL, MICHAEL S · 2001 to 2015
$6.8M
Data commons for 'omic, microscopy and analysis core facilitiesS10OD018164 · OD · DUKE UNIVERSITY · PI WRAY, GREGORY A. · 2014 to 2014
$598k
Differential Protein Interactions in Hutchinson-Gilford Progeria SyndromeR21AG050132 · NIA · JOHNS HOPKINS UNIVERSITY · PI REDDY, KAREN LYNN · 2016 to 2017
$446k
NCATS NIH HHS UL1 TR001117NIAID NIH HHS R01 AI049934NIA NIH HHS R21 AG050132NIGMS NIH HHS T32 GM007445NIH HHS S10 OD018164
6 · The paper itself

Abstract

Tcrb locus V(D)J recombination is regulated by positioning at the nuclear periphery. Here, we used DamID to profile Tcrb locus interactions with the nuclear lamina at high resolution. We identified a lamina-associated domain (LAD) border composed of several CTCF-binding elements that segregates active non-LAD from inactive LAD regions of the locus. Deletion of the LAD border causes an enhancer-dependent spread of histone H3 lysine 27 acetylation from the active recombination center into recombination center-proximal LAD chromatin. This is associated with a disruption to nuclear lamina association, increased chromatin looping to the recombination center, and increased transcription and recombination of recombination center-proximal gene segments. Our results show that a LAD and LAD border are critical components of Tcrb locus gene regulation and suggest that LAD borders may generally function to constrain the activity of nearby enhancers.

Indexed as

Genetic LociTranscription, GeneticAnimalsCell LineChromatinHistonesHumansLysineMice, Inbred C57BLModels, BiologicalNuclear LaminaReceptors, Antigen, T-Cell, alpha-betaRecombination, GeneticTranscriptional ActivationV(D)J RecombinationChromatinHistonesLysineReceptors, Antigen, T-Cell, alpha-betaCTCFDamIDLAD borderlamina-associated domainnuclear laminaT cell receptor βTcrbV(D)J recombination

Identifiers

PMID30428344
PMCPMC6287930
OpenAlexW2901365288

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.