Evidence map›Paper›PMID 30426392›Full record

ArticleFood and environmental virology2019

Detection of Human Enteric Viruses in French Polynesian Wastewaters, Environmental Waters and Giant Clams.

Laetitia Kaas, Leslie Ogorzaly, Gaël Lecellier, Véronique Berteaux-Lecellier, Henry-Michel Cauchie, Jérémie Langlet

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Food and environmental virology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. The Circulation of Type FPathogens (Basel, Switzerland) · 2020
    Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 6 countries.

Laetitia KaasEnteric, Environmental and Food Virology Laboratory, Institute of Environmental Science and Research (ESR), Kenepuru Science Centre, PO BOX 50-348, Porirua, 5240, New Zealand.
Leslie OgorzalyDepartment of Environmental Research and Innovation (ERIN), Luxembourg Institute of Science and Technology (LIST), Belvaux, Luxembourg.
Gaël LecellierPSL CRIOBE USR3278 CNRS-EPHE-UPVD, Labex CORAIL, Papetoai, Moorea, French Polynesia.
Véronique Berteaux-LecellierPSL CRIOBE USR3278 CNRS-EPHE-UPVD, Labex CORAIL, Papetoai, Moorea, French Polynesia.
Henry-Michel CauchieDepartment of Environmental Research and Innovation (ERIN), Luxembourg Institute of Science and Technology (LIST), Belvaux, Luxembourg.
Jérémie LangletEnteric, Environmental and Food Virology Laboratory, Institute of Environmental Science and Research (ESR), Kenepuru Science Centre, PO BOX 50-348, Porirua, 5240, New Zealand. langlet.jeremie@gmail.com.ORCID 0000-0002-6025-7612
Centre National de la Recherche Scientifique · FRLuxembourg Institute of Science and Technology · LUNew Zealand Institute for Public Health and Forensic Science · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lack of wastewater treatment efficiency causes receiving seawaters and bivalve molluscan shellfish to become contaminated, which can lead to public health issues. Six wastewater samples, five seawater samples and three batches of giant clams from Tahiti (French Polynesia) were investigated for the presence of enteric viruses, but also if present, for the diversity, infectivity and integrity of human adenoviruses (HAdV). Enteroviruses (EV), sapoviruses (SaV) and human polyomaviruses (HPyV) were detected in all wastewater samples. In decreasing frequency, noroviruses (NoV) GII and HAdV, rotaviruses (RoV), astroviruses (AsV), NoV GI and finally hepatitis E viruses (HEV) were also observed. Nine types of infectious HAdV were identified. HPyV and EV were found in 80% of seawater samples, NoV GII in 60%, HAdV and SaV in 40% and AsV and RoV in 20%. NoV GI and HEV were not detected in seawater. Intact and infectious HAdV-41 were detected in one of the two seawater samples that gave a positive qPCR result. Hepatitis A viruses were never detected in any water types. Analysis of transcriptomic data from giant clams revealed homologues of fucosyltransferases (FUT genes) involved in ligand biosynthesis that strongly bind to certain NoV strains, supporting the giant clams ability to bioaccumulate NoV. This was confirmed by the presence of NoV GII in one of the three batches of giant clams placed in a contaminated marine area. Overall, all sample types were positive for at least one type of virus, some of which were infectious and therefore likely to cause public health concerns.

Indexed as

AnimalsBivalviaPolymerase Chain ReactionPolynesiaSeafoodSeawaterVirusesWastewaterWastewaterAdenovirusesEnteric virusesGiant clamsInfectivityNext-generation sequencingNorovirusesRecreational waterWastewater

Identifiers

PMID30426392
OpenAlexW2901349272

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.