Evidence map›Paper›PMID 30425690›Full record

ArticleFrontiers in microbiology2018

Metagenomics-Based, Strain-Level Analysis of

Xin Fang, Jonathan M Monk, Sergey Nurk, Margarita Akseshina, Qiyun Zhu, Christopher Gemmell, Connor Gianetto-Hill, Nelly Leung, Richard Szubin, Jon Sanders and 8 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Journal of bacteriology · 2026
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Role of adherent invasiveWorld journal of clinical cases · 2022
    Review
  16. Intercontinental Gut Microbiome Variances in IBD.International journal of molecular sciences · 2022
    Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Xin FangDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, United States.
Jonathan M MonkDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, United States.
Sergey NurkCenter for Algorithmic Biotechnology, Institute for Translational Biomedicine, St. Petersburg State University, St. Petersburg, Russia.
Margarita AkseshinaSt. Petersburg Academic University, Russian Academy of Sciences, St. Petersburg, Russia.
Qiyun ZhuDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, United States.
Christopher GemmellDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Connor Gianetto-HillDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Nelly LeungDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Richard SzubinDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, United States.
Jon SandersDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Paul L BeckDivision of Gastroenterology, University of Calgary, Calgary, AB, Canada.
Weizhong LiHuman Longevity Inc., San Diego, CA, United States.
William J SandbornDepartment of Medicine, University of California, San Diego, La Jolla, CA, United States.
Scott D Gray-OwenDepartment of Molecular Genetics, University of Toronto, Toronto, ON, Canada.
Rob KnightDepartment of Pediatrics, University of California, San Diego, La Jolla, CA, United States.
Emma Allen-VercoeDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, ON, Canada.
Bernhard O PalssonDepartment of Bioengineering, University of California, San Diego, La Jolla, CA, United States.
Larry SmarrDepartment of Computer Science and Engineering, University of California, San Diego, La Jolla, CA, United States.

Funding

Systems Biology Approach to Redefine Susceptibility Testing and Treatment of MDR Pathogens in the Context of Host ImmunityU01AI124316 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PALSSON, BERNHARD O · 2016 to 2020
$10.2M
NIAID NIH HHS U01 AI124316
6 · The paper itself

Abstract

Dysbiosis of the gut microbiome, including elevated abundance of putative leading bacterial triggers such as

Indexed as

de novo assemblyEscherichia coligut microbiomeinflammatory bowel diseasemetagenomics

Identifiers

PMID30425690
PMCPMC6218438

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.