Evidence map›Paper›PMID 30425281›Full record

ArticleScientific reports2018

Efficient silica synthesis from tetra(glycerol)orthosilicate with cathepsin- and silicatein-like proteins.

Natalia V Povarova, Nikolay A Barinov, Mikhail S Baranov, Nadezhda M Markina, Anna M Varizhuk, Galina E Pozmogova, Dmitry V Klinov, Valery B Kozhemyako, Konstantin A Lukyanov

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 21 citations in OpenAlex.

  1. Co-option of Lysosomal Machinery for Sponge Biosilicification.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Review
  4. Engineered bacteria that self-assemble bioglass polysilicate coatings display enhanced light focusing.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Review
  6. Silactins and Structural Diversity of Biosilica in Sponges.Biomimetics (Basel, Switzerland) · 2024
    Article
  7. Article
  8. Nanoengineered Silica-Based Biomaterials for Regenerative Medicine.International journal of molecular sciences · 2024
    Review
  9. Article
  10. Review
  11. The genome of the reef-building glass spongeRoyal Society open science · 2023
    Article
  12. Arrested in Glass: Actin within Sophisticated Architectures of Biosilica in Sponges.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Article
  13. Calcite Nanotuned Chitinous Skeletons of GiantInternational journal of molecular sciences · 2021
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Natalia V PovarovaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997, Moscow, Russia.
Nikolay A BarinovFederal Research and Clinical Center of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, 119435, Moscow, Russia.
Mikhail S BaranovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997, Moscow, Russia.
Nadezhda M MarkinaShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997, Moscow, Russia.
Anna M VarizhukFederal Research and Clinical Center of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, 119435, Moscow, Russia.
Galina E PozmogovaFederal Research and Clinical Center of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, 119435, Moscow, Russia.
Dmitry V KlinovFederal Research and Clinical Center of Physical-Chemical Medicine, Malaya Pirogovskaya 1a, 119435, Moscow, Russia.
Valery B KozhemyakoG.B. Elyakov Pacific Institute of Bioorganic Chemistry, Far Eastern Branch of the Russian Academy of Sciences, 690022, Vladivostok, Russia.
Konstantin A LukyanovShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Miklukho-Maklaya 16/10, 117997, Moscow, Russia. kluk@ibch.ru.
Research Institute of Physical Chemical Medicine · RUInstitute of Bioorganic Chemistry · RUPacific Institute of Bioorganic Chemistry. GB Elyakova Far Eastern Branch of the Russian Academy of Sciences · RUPirogov Russian National Research Medical University · RU

Funding

Russian Science Foundation (RSF) 14-50-00131
6 · The paper itself

Abstract

Silicateins play a key role in biosynthesis of spicules in marine sponges; they are also capable to catalyze formation of amorphous silica in vitro. Silicateins are highly homologous to cathepsins L - a family of cysteine proteases. Molecular mechanisms of silicatein activity remain controversial. Here site-directed mutagenesis was used to clarify significance of selected residues in silica polymerization. A number of mutations were introduced into two sponge proteins - silicatein A1 and cathepsin L from Latrunculia oparinae, as well as into human cathepsin L. First direction was alanine scanning of the proposed catalytic residues. Also, reciprocal mutations were introduced at selected positions that differ between cathepsins L and silicateins. Surprisingly, all the wild type and mutant proteins were capable to catalyze amorphous silica formation with a water-soluble silica precursor tetra(glycerol)orthosilicate. Some mutants possessed several-fold enhanced silica-forming activity and can potentially be useful for nanomaterial synthesis applications. Our findings contradict to the previously suggested mechanisms of silicatein action via a catalytic triad analogous to that in cathepsins L. Instead, a surface-templated biosilification by silicateins and related proteins can be proposed.

Indexed as

Amino Acid SequenceAnimalsCathepsin LCathepsinsGlycerolHumansMutagenesis, Site-DirectedMutationPolymerizationPoriferaSilicatesSilicon DioxideCathepsin LCathepsinsGlycerolsilicatein alphaSilicatesSilicon Dioxide

Identifiers

PMID30425281
PMCPMC6233156
OpenAlexW2900378771

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.