Evidence map›Paper›PMID 30425106›Full record

ArticleCancer immunology research2019

High-Throughput Stability Screening of Neoantigen/HLA Complexes Improves Immunogenicity Predictions.

Dylan T Blaha, Scott D Anderson, Daniel M Yoakum, Marlies V Hager, Yuanyuan Zha, Thomas F Gajewski, David M Kranz

Abstract read
In one paragraph

Article in Cancer immunology research, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 50 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Computational Methods for Cancer Neoantigen Prediction.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  5. Review
  6. Review
  7. Review
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  9. Article
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  11. Article
  12. Structural and physical features that distinguish tumor-controlling from inactive cancer neoepitopes.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Therapeutic cancer vaccines: advancements, challenges, and prospects.Signal transduction and targeted therapy · 2023
    Review
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Dylan T Blaha *Department of Biochemistry, University of Illinois, Urbana, Illinois.
Scott D Anderson *Department of Biochemistry, University of Illinois, Urbana, Illinois.
Daniel M YoakumDepartment of Biochemistry, University of Illinois, Urbana, Illinois.
Marlies V HagerDepartment of Biochemistry, University of Illinois, Urbana, Illinois.ORCID 0000-0001-8050-4943
Yuanyuan ZhaDepartment of Pathology, Department of Medicine, and the Ben May Department of Cancer, University of Chicago, Chicago, Illinois.
Thomas F GajewskiDepartment of Pathology, Department of Medicine, and the Ben May Department of Cancer, University of Chicago, Chicago, Illinois.
David M KranzDepartment of Biochemistry, University of Illinois, Urbana, Illinois. d-kranz@illinois.edu.
University of Illinois System · USMay Institute · US

Funding

Engineering T Cell Receptors for Adoptive Cell TherapiesR01CA178844 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KRANZ, DAVID M. · 2014 to 2018
$1.6M
Influence of structurally related self-peptides on T cell-mediated therapiesR21CA187592 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI KRANZ, DAVID M. · 2015 to 2016
$337k
NCI NIH HHS R01 CA178844NCI NIH HHS R21 CA187592
6 · The paper itself

Abstract

Mutated peptides (neoantigens) from a patient's cancer genome can serve as targets for T-cell immunity, but identifying which peptides can be presented by an MHC molecule and elicit T cells has been difficult. Although algorithms that predict MHC binding exist, they are not yet able to distinguish experimental differences in half-lives of the complexes (an immunologically relevant parameter, referred to here as kinetic stability). Improvement in determining actual neoantigen peptide/MHC stability could be important, as only a small fraction of peptides in most current vaccines are capable of eliciting CD8

Indexed as

Antigens, NeoplasmHigh-Throughput Screening AssaysHLA-A2 AntigenPeptidesProtein StabilityTemperatureAntigens, NeoplasmHLA-A2 AntigenPeptides

Identifiers

PMID30425106
PMCPMC6324732
OpenAlexW2901714962

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.