Evidence map›Paper›PMID 30425074›Full record

ArticleThe EMBO journal2019

TCF/LEF dependent and independent transcriptional regulation of Wnt/β-catenin target genes.

Nikolaos Doumpas, Franziska Lampart, Mark D Robinson, Antonio Lentini, Colm E Nestor, Claudio Cantù, Konrad Basler

Abstract read
In one paragraph

Article in The EMBO journal, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 135 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
135citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

135 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Review
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  12. Harnessing Cuproptosis resistance to advance cancer therapeutics.Apoptosis : an international journal on programmed cell death · 2026
    Review
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75 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Nikolaos DoumpasInstitute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.
Franziska LampartInstitute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.
Mark D RobinsonInstitute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland.ORCID 0000-0002-3048-5518
Antonio LentiniSIB Swiss Institute of Bioinformatics, University of Zurich, Zurich, Switzerland.ORCID 0000-0003-1239-5495
Colm E NestorDepartment of Clinical and Experimental Medicine (IKE), Faculty of Health Sciences, Linköping University, Linköping, Sweden.
Claudio CantùInstitute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland claudio.cantu@liu.se kb@imls.uzh.ch.ORCID 0000-0003-1547-5415
Konrad BaslerInstitute of Molecular Life Sciences, University of Zurich, Zurich, Switzerland claudio.cantu@liu.se kb@imls.uzh.ch.ORCID 0000-0003-3534-1529

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During canonical Wnt signalling, the activity of nuclear β-catenin is largely mediated by the TCF/LEF family of transcription factors. To challenge this view, we used the CRISPR/Cas9 genome editing approach to generate HEK 293T cell clones lacking all four TCF/LEF genes. By performing unbiased whole transcriptome sequencing analysis, we found that a subset of β-catenin transcriptional targets did not require TCF/LEF factors for their regulation. Consistent with this finding, we observed in a genome-wide analysis that β-catenin occupied specific genomic regions in the absence of TCF/LEF Finally, we revealed the existence of a transcriptional activity of β-catenin that specifically appears when TCF/LEF factors are absent, and refer to this as β-catenin-GHOST response. Collectively, this study uncovers a previously neglected modus operandi of β-catenin that bypasses the TCF/LEF transcription factors.

Indexed as

Transcription, Geneticbeta CateninCRISPR-Cas SystemsExome SequencingGene EditingGene Expression ProfilingGene Expression RegulationHEK293 CellsHumansTCF Transcription FactorsWnt Signaling Pathwaybeta CateninCTNNB1 protein, humanTCF Transcription Factorssignalling pathwaysTCF/LEFtranscription factorsWnt signallingβ‐catenin

Identifiers

PMID30425074
PMCPMC6331726

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.